Candidatus Nitricoxidivorans perseverans: OHM77_09775
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Entry
OHM77_09775 CDS
T09820
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
npv
Candidatus Nitricoxidivorans perseverans
Pathway
npv02020
Two-component system
npv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
npv00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
OHM77_09775
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OHM77_09775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npv03021
]
OHM77_09775
Transcription machinery [BR:
npv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OHM77_09775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
WIM04982
UniProt:
A0AA49FK26
LinkDB
All DBs
Position
complement(1912688..1914181)
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AA seq
497 aa
AA seq
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MKQTLHLKLSQHLALTPQLQQSIRLLQLSTIELNQEIEQALQENPLLEREDGGAMGEGGF
TPSSDAMALAQPAAEPAAETPREYDGAADAGAMEAGWGVELSGGHGSRDPNDENDVDAGE
IQAAATGLREHLTAQLAMTQLSPRDRQLAAFLIEALDDDGYLAQSLEDLVDGIRDVHDEH
DGAAAVEREELIEDLSIALRHLQNFDPPGIAARSPRECLDLQLTSQPASKTRDLARAIVR
GHLDQLAGRDFARIRKSLGCTDDDLREAHALIRSLNPRPGAQFTPIDTRYIVPDVVVRKV
RGVWKASLNAEALPRLRINRLYADILQRQRKGNGSASAGLAGQLQEAKWLIKNVQQRFDT
IARVSQAIVDRQRAFFDHGEVAMRPLTLREIADTVSLHESTISRVTTQKYLASPRGVYEL
KYFFGSHVATDTGGAASSTAIRALIRQLVGAEDGHKPLSDARIAEILGEQGIVVARRTVA
KYRESLNIPPVNLRKTL
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagaccctccatctcaagctttcccagcacctcgccctgacgccgcaattgcag
cagtcgatccggctgttgcagctgtcgaccatcgagctcaaccaggagatcgaacaggcg
ctccaggaaaatcccctgctcgagcgcgaggacggcggggcgatgggcgaggggggattt
acgccttcgtcggatgccatggcccttgcccaaccggctgccgagcccgccgccgagacg
ccccgagagtatgacggtgccgccgatgcgggcgcgatggaagccggctggggcgtggag
ctgtccggcggccacggttcgcgcgaccccaacgacgaaaacgacgtggacgccggcgag
atacaggcggcggccaccggcctgcgcgaacacctgaccgcgcagctcgccatgacccag
ctttccccgcgggatcggcaactggcagcctttctcatcgaggcgctcgacgacgacggc
tatctcgcccagagtctggaagacctggtcgacggcatccgcgatgtgcatgatgaacac
gacggggccgccgccgtcgaacgcgaggaattgatcgaggatttgtccatcgcgctgcgg
catctgcagaacttcgatccaccgggcatcgccgcacgcagcccgcgggagtgcctcgat
ctccaactcaccagccagcccgcatcaaagacccgcgatctggcgcgcgccatcgtgcgc
ggccacctggaccagcttgccggccgcgacttcgccaggatcaggaaatcgctcggctgc
acggacgacgatctgcgcgaggcccacgcgttgatccgttccctgaatccccgacccggc
gcgcagttcacgccgatcgacacccgctacatcgtgcccgatgtcgtcgtgcgcaaggtg
cgcggcgtctggaaggccagcctcaacgccgaggcgctgccccggctgcgcatcaaccgc
ctctacgccgacatcctgcagcggcagcgcaagggtaacggttcggcttccgccggcctg
gcgggccagctgcaggaagcgaaatggttgatcaagaacgtgcagcagcgcttcgacacc
atcgcccgcgtttcacaggccatcgtcgaccgccagcgcgccttcttcgaccacggtgag
gtcgccatgcggccgctgacgctgcgcgagatcgccgacaccgtcagcctgcacgaatcc
accatctcgcgcgtgacgacgcagaagtatctcgccagtccgcgcggcgtctatgaactc
aagtattttttcggcagccacgtcgccaccgacaccggcggggccgcctcttccaccgcg
atccgcgcgctaatcaggcagctggtgggcgccgaagacggccacaagccgctctccgac
gcccggatcgcggaaatcctcggcgaacagggtattgtcgtggcgcggcgcaccgtcgcc
aagtaccgggaatccttgaacatcccgccggtcaacctgcgcaaaactttataa
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