Candidatus Nitricoxidivorans perseverans: OHM77_12120
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Entry
OHM77_12120 CDS
T09820
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
npv
Candidatus Nitricoxidivorans perseverans
Brite
KEGG Orthology (KO) [BR:
npv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npv03019
]
OHM77_12120 (hrpA)
Enzymes [BR:
npv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OHM77_12120 (hrpA)
Messenger RNA biogenesis [BR:
npv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OHM77_12120 (hrpA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
WHD_HA2
AAA_25
AAA_30
nSTAND3
nSTAND_NTPase5
T2SSE
NACHT
PhoH
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
WIM05415
UniProt:
A0AA49IW67
LinkDB
All DBs
Position
complement(2371085..2374639)
Genome browser
AA seq
1184 aa
AA seq
DB search
MTYDPEPPSLKPDPAARLAARPAVAYDEALPINARRDEIAEAIAAHQVVVVCGETGSGKT
TQLPKICLEMGRGIHGLIGHTQPRRIAARATAARIAQELKSELGKYVGYKIRFTDRVSGD
TYIKLMTDGILLAETQTDPLLRQYDTLLIDEAHERSLNIDFLLGYLKSVLAKRRDLKVIV
TSATLDAERFSKHFGDAPVIEVSGRLFPIETRWRPFDEDRDINDAIVDAVAEAHREGAGD
VLVFLPGEREIREAAEALRKHHPPGLEILPLFARQSAQEQSRVFSPHQGRRVVLATNVAE
TSLTVPGIRYVVDTGLARVKRYSHRNKVEQLQVEPISQAAAKQRAGRCGRVAAGVCFRLY
SEEDFNKRPPYTDPEILRSSLAGVILRMKSLHLGDVENFPFLEVPLPRMIADGYGLLGEL
GAIDEAKGLTPVGLELAKLPLDPKIGRMILAARRHGCLKEMLVIAAALSVQDPRERPQEA
AGSADQAHAKWKDEKSEFLSYLKLWAATEEVWKNESTNKQRAWCRREFLSWLRVREWRDV
HGQLATMCHEHSWKENQLPASFDAIHKALLTGLLGHIGLVNEEDKNYLGARGIKFFIHPG
STLVKKAGRWIVAAELVETSRLFARCIAKIEPEWLEEVGAHLVRRHVFEPHWEKGPGQVV
AWERVTLHGLLLHGKRRIHYGPLDAKLSREILIRRALVQGEVGEDWLRKWKFLQHNLKLV
EEIERLEHKSRRPDVLVDEELIHAFFDAKVPEGTATLAAFDKWRREAEIGAPKLLFLEKD
QLMRHEAAGITTDAFPPELNGFHLTYKHDPGAADDGVTLSLPLAMLNRMSATRCEWLVPG
LLKEKIVALLKTLPQKYRHRVQPVDAFAETFCDADLDIDEPLVRSLTRAVEEKIALKLPL
DAFRPGELRPHLLMNFRLEDEHGGTLAMSRNLAELRAEYGDFAEPSEEKAAEAERVSLSD
RFAAALNPQIKFAEKSLPRELGMLFMPLGAEKELKEQIVAATIGRICLAEPLPEDEKAFE
ARVAMAKGKVALVAQEIARLVGTILTEHTALQKKLAAMQKAFPQACADIAAQACALLAKN
FIAATPHERLAHFPRYLKAASLRLDKARSDPARDARLMAEWQGLARPFERERAAMGKSGV
TDPFLEEFRWLLEELRVALFAQELKTPSPVSVKRLQKMWGGRYS
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
gtgacatatgatccggagccgcccagcctgaagcccgaccccgctgcccgcctggccgcg
cggccggccgtcgcctatgacgaggcgctgccgatcaacgcgcgccgcgacgagatcgcc
gaggcgatcgccgcgcatcaggtcgtggtcgtctgcggcgagacgggttcgggcaagacc
acgcagctgccgaagatctgcctcgaaatgggccgcggcatccacggcctcatcggccat
acacagccgcgccgcatcgccgcgcgcgccaccgcggcgcgcatcgcgcaggagctgaag
tccgaacttggaaaatacgtcggctacaagatccgcttcaccgaccgggtgtcgggcgac
acctacatcaagctgatgaccgacggcatcctgctggccgagacgcagaccgatccgctg
ctcaggcaatacgacacactcctcatcgacgaagcgcacgaacgctcgctcaacatcgac
ttcctgctcggctacctgaagtcggtgctggcgaaacggcgcgacctgaaggtgatcgtg
acgtcggcgacgctggacgcggagcgtttctcgaagcacttcggcgatgcgccggtgatc
gaggtctcgggccggctctttcccatcgagacgcgctggcggccgttcgatgaagatcgt
gacatcaatgatgccatcgtggatgcggtggccgaggcgcatcgcgaaggcgcgggcgac
gtgctggtcttcctgcccggcgagcgcgagatccgcgaggccgcggaagccttgagaaaa
caccaccctccgggattggagatattgccgttgttcgctcgccagtcggcgcaggaacaa
agccgggtgttttcgccgcaccagggacgccgcgtagtgctggcgaccaacgtcgccgaa
acctcgctgacggtgccgggcatccgctatgtggtcgacacgggactggcgcgcgtgaag
cgctacagccaccgcaacaaggtggagcagttgcaggtcgagccgatctcgcaggcggcg
gcgaagcagcgggccggccgctgcgggcgcgtcgcggcgggcgtctgcttccggctctat
tcggaggaggatttcaacaagcggccgccctacaccgatccggagatcctgcgctcctcg
ctggccggcgtgatcctgcgcatgaagtcgctgcatctcggcgatgtcgaaaacttcccc
ttcctcgaagtgccgttgccgcgcatgatcgccgacggctacggactgctcggggaactc
ggcgccatcgacgaggcgaagggactgacgccggtcggcctggaactggcgaaactccca
ctcgacccgaagatcggccgcatgatcctcgccgcgcggcgccacggctgcctcaaggag
atgctcgtcatcgccgcggcgctctcggtgcaggatccgcgcgagcgtccccaggaagcc
gccgggtctgccgaccaggcgcatgcgaagtggaaggacgagaagtccgagttcctgtcg
tatctcaagctctgggccgcaacggaggaagtctggaagaacgaatccaccaacaagcag
cgcgcctggtgccggcgcgagttcctctcctggctgcgcgtgcgcgaatggcgcgacgtg
catggtcagctcgcgacgatgtgccacgagcattcgtggaaggagaaccagctcccggcg
agcttcgatgccatccacaaggcgctgctgacgggcctgctcggccacatcggcctcgtc
aacgaggaggacaagaactacctcggtgcgcgcggcatcaagttcttcatccatccgggc
tcgacgctggtgaagaaggcggggcgctggatcgtggcggcggaactggtcgagacctcg
cgcctgttcgcgcgctgcatcgcgaaaatagaaccggagtggctggaggaagtcggcgcg
cacctcgtccgcaggcatgtgttcgagccgcactgggagaaaggccccggccaggtggtg
gcgtgggaacgggtgacgctgcacggcctgctgctgcacggcaagcggcgcattcactat
ggtccgctcgacgcgaagctctcccgcgaaatcctcatccgccgcgcgctggtgcagggc
gaggtgggcgaggactggctgcggaaatggaaattcctccagcacaatctgaaactcgtg
gaggagatcgagcgcctcgaacacaagtcgcgccggcccgacgtgctggtggacgaggag
ctgatccacgccttcttcgacgcgaaggtgcccgaaggcaccgccacgctggccgccttc
gacaagtggcggcgcgaagcggagatcggggcgccaaagctgctgttcctcgaaaaagac
cagctcatgcgccacgaggcggcgggcatcaccaccgacgcctttccgccggagctgaac
gggttccatctgacctacaagcacgaccccggcgcggcggacgacggcgtgacgctttcg
ctgccgcttgcaatgctcaatcgcatgtcggcgacgcgctgcgaatggctggttccggga
ctgctgaaggaaaagatcgtggcgctgctgaagacgctgccgcagaagtatcgccaccgg
gtacagcccgtcgacgccttcgcggaaactttttgcgatgccgacctcgatatcgacgaa
ccgctggtcaggtcgctgactcgtgcggtggaggaaaagatcgccctcaagctgccgctc
gacgccttccggcccggcgagctgcgtccgcacctgctgatgaacttccggctggaggac
gagcatggcggcacgctggccatgtcgcgcaatctcgcggaattgcgcgcggagtacggc
gacttcgccgaaccgtccgaggagaaggcggccgaggccgagcgtgtgagcctctccgac
cgcttcgcggccgcgctcaacccacagatcaagttcgcggagaagagcctgccgcgagaa
ctgggcatgctattcatgccgctgggcgccgagaaggagctgaaggaacagatcgtcgcg
gcgaccatcgggcgcatctgcctcgccgagccgctgccggaagatgaaaaggctttcgaa
gcgcgggttgcgatggcgaaaggcaaggtggcgctggtggctcaggagatcgcccgcctg
gtcggcacgatcctcaccgagcacactgccttgcagaagaagctcgccgcgatgcagaag
gcgttcccgcaggcctgcgccgacatcgcggcgcaggcctgcgccctgctggcaaagaat
ttcatcgccgccacgccccacgaacggctggcgcacttcccgcgctacctcaaggccgcc
agcctgcgcctggacaaggcgcgcagcgaccctgcccgcgacgcgcggctgatggccgag
tggcagggcctcgcccgccccttcgagcgcgagcgcgcggcgatggggaaatcgggcgtg
acggacccgtttctggaagaattccgctggctgttggaggaattgcgcgtcgcgctgttc
gcgcaggaactgaagacgccctcgccggtatcggtcaagcggttgcagaagatgtgggga
ggacgctactcctga
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