Candidatus Nitrosymbiomonas proteolyticus: NPRO_10960
Help
Entry
NPRO_10960 CDS
T07108
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
npy
Candidatus Nitrosymbiomonas proteolyticus
Pathway
npy02020
Two-component system
npy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
npy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NPRO_10960
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NPRO_10960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npy03021
]
NPRO_10960
Transcription machinery [BR:
npy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NPRO_10960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_Crp_2
SF3b1
HTH_12
Motif
Other DBs
NCBI-ProteinID:
BBO23501
UniProt:
A0A809S9A2
LinkDB
All DBs
Position
1216208..1217593
Genome browser
AA seq
461 aa
AA seq
DB search
MRQDFRQRQQADTRLQTRVDPRVIMKSQVVQLAVPELMQAIELELQENPALERLEEEAEP
LTEEQILRTVAPQELKVSRDDQELWRCLPKGDAEQNDWLDLAIAPISAIEHLRAQLLPML
DAELRPLGELLIGSVDENGYLSCSVEEAALATGRAMEEVQAAIRLLQTCDPSGVGATSVV
ECLQIQLRDSEDPLAPLAQRILSRHMDEFVAKKSRTISRKCKVAQDLVEDAFDLIRSLNP
YPLQGFHGNVTHGTAPRVAQVTPDVVLTKLETGWKIEVLGGDPASLTINREYGRCYHRIR
SGEPMDGDEAAHVLEYVQRAHTFLDCLSNRRTTMLKVGEYLTNKQESFITTGRYSFLRPL
TRSQMAADIGLHESTVSRATAGKFVQIATGEVVSFEVFFKPALRVQKLVEEILESEDPNE
PLSDEEVSQILAKRGFNIARRTVNKYRSQLRLLSSRARRSA
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgagacaggacttcagacagcggcaacaggcggacacccggctccaaacccgagtcgat
ccgcgcgtcatcatgaagagccaggtggttcagcttgcggtccccgagttgatgcaagcg
atcgaactcgagcttcaggaaaaccccgcgctcgaaaggctcgaagaagaggctgagccg
ttgaccgaagagcagattctacggacggtcgccccgcaagagctgaaggtttcgcgggat
gaccaagagttgtggcggtgcctacccaaaggcgacgcggagcaaaacgactggctcgac
cttgccatcgcgccgatttcggccatcgagcaccttcgggcgcaattgctgccgatgctc
gacgcagagctccggccgctgggtgaattgctgatcgggagcgtcgatgagaacggatat
ctcagttgctctgtcgaggaggcggctctcgcgacggggcgcgcgatggaagaggtccag
gctgcgatccggctcctgcaaacgtgcgatccgagcggcgtgggcgcgaccagcgtcgtc
gagtgccttcagatccaactgcgggactctgaagatcccctcgctcctctggctcagagg
atcttatcacggcacatggatgagttcgttgcgaagaaatcccggacgatctcacggaag
tgcaaagtggcgcaagacctcgtcgaagacgcctttgacctgatccggtcgttgaaccct
tacccgctccagggtttccacggcaacgtcacgcacggaactgcgccccgcgtcgctcag
gttacgccagacgtggtcctgaccaagctcgaaacgggctggaaaatcgaagtgctgggg
ggcgacccggcttcgcttacgatcaaccgggagtacggccggtgctaccaccgaattcgc
agcggggagcccatggatggagacgaggcggctcacgtccttgagtacgtccagcgcgcc
cacacgttcctcgactgcttgagcaaccgaaggaccacgatgctcaaagtcggcgagtat
ttgacgaacaagcaagagagcttcatcacgacggggcgatactcgttcttgcgccccctg
acgcgctcccagatggccgccgatatcgggctgcacgaaagcaccgtcagccgggcgact
gcggggaagttcgttcagatcgccacaggcgaggtagtctcgttcgaggtgtttttcaag
ccagcgctaagggtccagaaactggtcgaggagattctcgaatcggaggacccgaacgaa
ccgctttccgacgaagaggtgtcgcagattctcgctaagcgcggcttcaacatcgcccgg
aggacggtcaacaagtaccgctcgcaattgcgacttctgtcctctcgcgcccgccgctcg
gcttag
DBGET
integrated database retrieval system
