Candidatus Nitrosymbiomonas proteolyticus: NPRO_16140
Help
Entry
NPRO_16140 CDS
T07108
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
npy
Candidatus Nitrosymbiomonas proteolyticus
Brite
KEGG Orthology (KO) [BR:
npy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
npy03016
]
NPRO_16140
Enzymes [BR:
npy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NPRO_16140
Transfer RNA biogenesis [BR:
npy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NPRO_16140
Prokaryotic type
tRNA splicing ligases
NPRO_16140
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BBO24019
UniProt:
A0A809R996
LinkDB
All DBs
Position
complement(1751617..1752795)
Genome browser
AA seq
392 aa
AA seq
DB search
MQLVEGIPVWGEPIQEDALKQMRTCALDARFVALMADHHVGYSVPIGGVVAYAHHVSPSG
VGFDIACGNKAVVTDMNGTELRSSIKSIMDDVWSRLSFGVGRVNKLEKVDHELFDDPAWK
VRAVGPLKQLARDQLGTIGGGNHFVDLFTDEQDRVWIGVHFGSRGLGHRIATHFIEAGGG
KDAMFVAPVLLHIESELGKEYLEAMRLAGRYAYAGRDWVCGQVLSILGANPLDEVHNHHN
FAWRETHFGEELWVVRKGATPAFPGQSGFVGATMGDTSVILEGVDSEESKLALYSTVHGA
GRVLSRTQAKGKVQRRSGKVLAAGKVTREVMDERIRSAGVELRGADVDESPHCYKKLDEV
LEHHKATIRVLHRLTPVGVAMAGPETRDPYKD
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
gtgcagctcgtcgaaggaatccccgtttggggtgagccgatccaagaggatgccctcaag
cagatgcgaacgtgcgcgctcgacgcacggttcgtcgcgttgatggcggaccaccacgtc
gggtactccgttccgatcggcggggtcgtcgcttatgcgcaccacgtctcgccgagcggc
gtagggttcgacatcgcctgcggcaacaaggccgtcgtcaccgacatgaacgggacggaa
ctccgaagctccatcaagtcgatcatggacgacgtttggtccaggctcagctttggcgtc
ggacgggtcaacaagttggagaaggtcgatcatgagttgttcgacgacccggcttggaag
gttcgtgcggtcggcccgctgaaacagctcgcgcgcgaccaattgggaaccatcggcggc
ggaaaccacttcgtagacctcttcaccgatgagcaggaccgcgtatggattggagttcac
ttcgggtcgagagggttggggcacaggatcgcaactcacttcattgaggcgggcgggggc
aaagacgcgatgttcgtggctccggttttgctgcacatcgagtctgagttgggaaaggag
tacttggaggcgatgcggcttgcgggccgctacgcctacgccggccgggattgggtctgc
ggccaggtgctttcgatcctcggcgcgaatccgctcgacgaagtccacaatcaccataac
ttcgcctggcgggagactcattttggcgaagagctatgggtggtaaggaagggggccaca
ccggcgtttcctggccagagcgggttcgtcggagcgacgatgggagacacctcggtgatc
ctcgaaggcgtcgacagcgaggagtcgaaacttgcgctctattccaccgtccacggcgca
gggcgagttctgagccgaacgcaggcgaagggcaaggttcagcgaaggtccgggaaggtg
ttggccgccgggaaggtcacccgcgaggtgatggacgagcgcatccgttccgcaggagtc
gaacttcgcggagccgacgtggacgaatctccgcactgctacaagaagctcgacgaggtg
ctggaacaccacaaggccacgattcgggttctgcaccgactgacgccggtcggcgttgcg
atggccggcccggaaacgcgagacccgtacaaggactga
DBGET
integrated database retrieval system
