Candidatus Nitrosymbiomonas proteolyticus: NPRO_16740
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Entry
NPRO_16740 CDS
T07108
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
npy
Candidatus Nitrosymbiomonas proteolyticus
Pathway
npy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
npy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NPRO_16740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npy03021
]
NPRO_16740
03400 DNA repair and recombination proteins [BR:
npy03400
]
NPRO_16740
Enzymes [BR:
npy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NPRO_16740
Transcription machinery [BR:
npy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NPRO_16740
DNA repair and recombination proteins [BR:
npy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NPRO_16740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
CtsR_C
DACND
Motif
Other DBs
NCBI-ProteinID:
BBO24079
UniProt:
A0A809R9F4
LinkDB
All DBs
Position
1833983..1838710
Genome browser
AA seq
1575 aa
AA seq
DB search
MADVSQFNKIRIGIASPTDIRSWAFRHGVHHEVKKPETINYRTFKPERDGLFCEKIFGPV
KDYECSCGRYKKIKYAGIICERCGVEVTKSRVRRERMGIIELAAPVCHIWYLKGVPSPLA
LILDISPRLLEKVIYFASFIIIDIEAEKIAELLPKVKEAAEQEKATIMRHMRELEEDSFT
RFFEELDSNSDEYDEGSVRERAKAINDRIRAEYRDADDRLKDLDLAVDILGKLERNQLID
EEKYRAVSKMLDAVGAKLDLELRNLVRANIGAEAIKELLTRVDLEKLARELRQEIVSTTS
QRRARAIKRLEIAEALISSKSRPEWMILDVIPVISPELRPMVQLDGGRFATSDLNDLYRR
IINRNNRLKKIMEIHAPESIINHEKRLLQEAVDALVDNGRRSRPVVGSNSRPLKSLSDML
KGKEGRFRKNLLGKRVDYSGRSVIVVGPHLKLHQCGLPKEMALELFKPFVMKTLVEKKIT
QNIKTAKRMIDRMHPAVWDGLEEVIKEHPVLLNRAPTLHRLGIQAFEPILVDGKAIQIHP
LVCHAYNADFDGDQMAVHVPLSLQAQAEARVLMLSTQNLFSPADGRPIMSPIQDIVLGAF
ALTFTDKASLQSLEEAVAKHEADPENNPAPKVYRDPAEVTFHLESPNVENPVQLNQAVRV
RIRRPVFRPDSEIDHRDPATGQEYRYETTKGEDDEEKRELKPLETEFETVVRVSTAGRLL
FNEALPYPLKHSDGMLQIELTKKMLAELIVLCQRQCGLGGTIRLLDDLKDLGFRWATKYG
LSIAITDMDPPAGREAILQEADDSSNTILTRYRRGMLNFNEMQRRLVDLWSKTYDKIGDE
IQAGMHQFNPLTIITASGARGSVKQLAQLAGMRGLMFNQFNEVIYELPVKSSFQKGLSML
EYFVTTHGARKGLADTALRTADAGYLTRRLVDVSQDVIIRREDCGTTEGVLCHRILNDED
EVIEKVGDRLIGRVALRDLVDPETNQQLMTAGEVITVDQAKRINEVEVQFTAVAEATDSD
QARQTLGDKMIGAGFEINEHGLLCIPIRSPLTCDLDQGICSHCYGVDLSTNKLVEVGVAV
GIIAAQSIGEPGTQLTMRTFHTGGVAGSATIARTSQYKTGKFIRQFMADLEAAMDTDMKQ
LDPTKLLESQEEAVKDLFTDSDRLTINEADTGKKKTERQTKAAIKAAEKMDTESRKMWEK
SRKTFFYAWTGESSGIVRVEEIFEARKQPRGKAIICPVTGVVRSIRDSNFGRWVIVDSVV
PVKETLKDAYIADVQEFLGGKKTEAALEKIVGQKFTTATLTVLRKHEVEHVRVYYPILVP
PIGNLPVKAGSKVIQGDPLTYGPRDPHEILELAGAGAVYDYFVENLQSVYKAQGVDINDK
HIEVIIRQMLRKRQIKEPGDTPFLPGQIVDRFQLRRENEKVRQAIQAGKMIKYVDPMTSE
NVEREPREATANWILLGITEASLATESFLSAASFQKTTRVLTEAAVRGKKDTLVGLKENV
IIGRLIPAGTGVSQYRSLAVDVERGPAWAHQSLTALVEAEAPEELQPDAGLAFPSLAEMA
AEEATSVPEEPEDES
NT seq
4728 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgtaagtcaattcaacaaaatccgaatcggcatcgctagcccaaccgacatc
cgaagttgggcatttcgtcacggcgtacaccacgaggtcaaaaaacccgaaacgatcaat
tatcgcacgttcaaaccggagcgtgacgggctgttctgcgagaagattttcggtccggtc
aaggactacgaatgttcctgcgggcgctacaaaaagatcaaatacgccggcatcatctgc
gaacggtgcggcgtcgaagtcaccaagagccgcgtccggcgcgagcgaatggggatcatt
gaactcgccgctcccgtttgccacatttggtacctgaagggagttccgagcccgctcgcc
ctcattctggacatctccccccggctgctcgaaaaggtcatctacttcgccagcttcatc
atcatcgacattgaagccgagaagatcgccgagctgcttccgaaggtgaaggaggcggcg
gagcaggagaaggccacgatcatgcggcacatgagggaactcgaagaagacagcttcacg
aggttcttcgaagagcttgacagcaacagcgatgagtacgacgaaggttcggtgagggag
cgcgcgaaggcgatcaacgaccgcattcgggccgaataccgcgatgccgacgaccggctc
aaggaccttgaccttgcggtggacatcctcggcaagctcgagcgcaaccaactcatcgac
gaagagaagtaccgcgcggtcagcaagatgctcgacgccgtgggcgccaagctcgatctg
gaactgcgcaacctcgtccgggccaacatcggggccgaggcgatcaaggagctcttgacc
cgcgtcgacctcgaaaagctcgcccgtgaactccggcaagagatcgtgtcgacgacctcg
cagcgccgagcccgcgccatcaagcggctcgaaatcgcggaagcgctcatttccagcaag
agccgccctgagtggatgatcctcgatgtcatccctgtcatcagccccgaactgcgcccg
atggtccaactcgacggcggacgtttcgcaacgtcggacctgaacgacctgtatcggcga
atcatcaaccgcaacaaccggctcaagaagatcatggagattcacgcgccggagtcgatc
atcaaccacgaaaagcgactgcttcaagaggcggtcgatgcgctggtcgataacggccgc
cggtctcgtcccgtcgtgggctccaactcccgcccgctcaagtcgctgagcgacatgctc
aagggcaaggaagggcggttccgaaagaaccttcttggaaagcgcgtggactattcgggc
cgttcggttatcgtggttggaccccacctgaaactccaccagtgcggacttcccaaggag
atggcgctcgaactctttaagccgttcgtgatgaagacgcttgtcgagaaaaagatcacc
caaaacatcaagacggccaagcgcatgatcgatcggatgcacccggccgtgtgggacgga
ttggaggaggtcatcaaggagcacccggttctcctgaaccgcgctccgaccctgcaccga
ttgggaatccaggcgttcgagccgatccttgtcgatggcaaagcgattcagattcacccg
ctcgtttgccatgcctacaacgcggacttcgacggcgaccagatggctgttcacgtcccg
ctttccttgcaggcgcaggcggaagctcgggtcttgatgctgagcactcagaacctcttc
tcgccggcggacgggcgcccgatcatgtcgccgatccaggacatcgtcttgggggcgttc
gcgcttacgttcacggacaaggcgtcgctgcaaagcctcgaggaggctgtggcgaagcat
gaggccgaccctgagaacaacccggcgcccaaggtctaccgcgaccctgccgaagtgacc
ttccatctcgaatcgcccaacgtcgagaacccggtccaactcaaccaagccgttcgtgtc
cgaatccgccgcccggtcttccgacccgacagcgagatcgatcacagggacccggcgacc
ggccaggaataccgttacgagaccacgaagggcgaagacgacgaggaaaagcgcgaactc
aagccgctcgaaacggagttcgagacggtggtcagggtctcgacggccggaaggctcctg
ttcaacgaggctttgccttacccgctcaagcacagcgacggaatgcttcagatcgagctt
accaagaagatgctcgccgagttgatcgttctttgccagaggcaatgtgggcttggaggg
acgattcggctcctggacgacctgaaggaccttgggttccgatgggcgacgaagtacggg
ctctccatcgccatcacggacatggacccgcctgcgggaagggaagcgattcttcaagag
gcagacgactcgtcgaacacgatcctcacgcgataccgcagggggatgctcaacttcaac
gagatgcagcgtaggctggtcgacctatggtcgaagacctacgacaagatcggcgatgag
attcaggcggggatgcaccaattcaacccgcttacgattatcaccgcctcgggcgctcgc
ggctcggtcaagcagctcgctcagcttgcgggaatgcgcggcctgatgttcaaccagttc
aacgaggttatttacgaactccccgtcaagagttcgttccaaaagggcctttcgatgctg
gagtatttcgtgaccacgcacggcgcccgcaagggtctcgccgacacagcgctgcgaacc
gccgacgctggatacctcacaaggcgactcgtcgatgtctcgcaggacgtgatcattcga
cgcgaagactgtggcacgaccgaaggggtgctttgccaccgcatcctcaacgatgaggac
gaggtcatcgagaaggtcggtgatcgcctgatcggccgagtcgccttgcgcgatttggtc
gacccggaaacgaaccaacaactcatgacggccggcgaagtcatcaccgtcgatcaggcg
aagcggatcaacgaggtcgaggttcagttcaccgctgtagctgaggcgacggattccgac
caggcaaggcagaccttgggcgataagatgatcggcgccgggttcgaaatcaacgaacac
ggcctgctgtgcattccgatccggagcccattgacctgcgacctcgatcaagggatttgc
agccactgctacggagtggacctttcgaccaacaagttagtcgaagtcggggtcgcagtg
gggatcatcgcagcccaatcgatcggtgagccgggcactcagctcacgatgaggacgttc
cacaccggaggcgttgcaggttcggcgacgattgcacgtaccagccagtacaagaccggt
aagttcattcgtcagttcatggcggaccttgaggccgcgatggacaccgacatgaagcaa
ctcgatccgacgaagttgctggagtcccaagaggaagccgtcaaggacctctttacggac
tcggatcgcttgacgatcaacgaggccgacaccggcaagaagaagaccgagcggcaaacc
aaggccgccatcaaggccgcggaaaagatggacaccgaatcccggaagatgtgggagaag
tcgcggaagaccttcttctatgcttggacgggcgagtctagcggcatcgtccgcgtcgaa
gagatcttcgaggcgcggaagcaacctcgtggaaaggcaatcatctgcccggtcacgggc
gttgtgcggtcgattcgtgattcgaatttcggccgctgggtgatcgtagattcggtggtc
ccggtcaaggagacccttaaggacgcctacattgccgacgttcaggagttccttggcggc
aagaagaccgaggccgctctcgaaaagatcgtcggccagaagttcacgaccgccacgctc
accgtactcaggaagcacgaagtcgagcacgttcgcgtgtactatccgatcctcgttccg
ccgatcggcaacttgcccgtgaaggccggctccaaggtgattcaaggcgacccgttgact
tacggtcctcgggatcctcatgagattctggaactcgccggcgcgggcgcggtctacgac
tacttcgtggaaaacttgcagtcggtctataaggctcaaggcgtcgacatcaacgacaag
cacatcgaagtcatcattcggcagatgcttcgcaagaggcaaatcaaggagccaggggat
accccgttcctgccgggccagatcgtggaccgattccaactccgacgcgagaacgagaag
gtccgtcaagccattcaggcgggcaagatgatcaagtacgtcgatccgatgacgagcgaa
aacgtcgagagggagccgcgcgaggccacggccaactggattctgttgggcatcaccgag
gcgtcgctcgcaacggagtcgttcctttcggcagcttcgttccagaagaccacccgcgtt
ctgacagaggccgcggttcgaggcaagaaggacacccttgtcggcctgaaggaaaacgtc
atcatcgggcggctgattccggccgggacgggcgtttcccagtaccggtcgcttgcggtc
gacgtcgagcgaggacctgcgtgggcacaccagtccctcaccgctctggtggaagcggaa
gctcccgaggaactccaacccgacgcggggcttgcgttcccgagccttgccgaaatggcc
gccgaagaggcgacttcagttccggaagagccggaagacgagtcgtaa
DBGET
integrated database retrieval system
