Nostoc piscinale: ACX27_20820
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Entry
ACX27_20820 CDS
T09766
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
npz
Nostoc piscinale
Pathway
npz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACX27_20820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npz03019
]
ACX27_20820
03009 Ribosome biogenesis [BR:
npz03009
]
ACX27_20820
Enzymes [BR:
npz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACX27_20820
Messenger RNA biogenesis [BR:
npz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACX27_20820
Ribosome biogenesis [BR:
npz03009
]
Prokaryotic type
rRNA helicases
ACX27_20820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Cas3-like_C_2
VpsR
Motif
Other DBs
NCBI-ProteinID:
ALF54720
UniProt:
A0A0M4T486
LinkDB
All DBs
Position
complement(4871708..4873234)
Genome browser
AA seq
508 aa
AA seq
DB search
MNLSFIELGISQERAEQLEKIGFTAPTNIQIQAIPQLLAGRDVVGQSQTGTGKTAAFSLP
ILERLDVSQRAVQAVVLTPTRELAIQVHDAVSQFIGNSGLRALAIYGGQSIDRQIMQLKR
GVHIVVGTPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVERILSQAPQERQTA
LFSATMPPSIRMLVNKFLRSPVTVTVEQPKAAPNKINQVAYLIPRHWTKAKALQPILEME
DPETALIFVRTRRTAAELTNQLQAAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATD
IAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFERH
NRQSWQLLSIPTRAQIEARHINKLQEQVREALSGERLASFLPIVSELIEQYDAHAIAAAA
LQLAYDETRPAWLSSEVEIPEEVPVAKPKIVKRREFSGDRNRSWNKSDANNGDEGRSTPK
PKLRSGRREAPVSANQKLGSSTARESAS
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttcgtttattgaactaggaatttcccaagaacgcgctgaacaattagaaaaa
attggttttaccgcacctactaacattcaaatccaagctattccccaactgttggcagga
cgagatgtagtaggacagtctcaaactggtacaggcaaaacagccgccttttctctacca
attttagagcggctggatgtcagccaaagagcagtgcaagctgtagttttaacaccaact
cgtgaattagcgattcaagtccatgatgctgtcagccaatttattggaaacagtggctta
cgggctttagcaatttacggtggtcaatcaattgaccgtcaaattatgcaacttaagcgg
ggcgttcacatcgttgtcggtactcccggacgggtgattgatttgttagagcgcggtagc
ttgaaattagatcaagtgaagtggtttgtattggatgaagccgatgaaatgttaagcatg
ggctttattgatgatgtcgaaagaatcttgtcccaagcaccccaagaacggcaaacggca
ttgttctccgcgacaatgcctccgtcaattcggatgttggtgaacaagtttttgcgatcg
cctgttactgtaacagttgaacagcctaaagctgcacccaacaaaatcaaccaagtagct
tacttgattccccgccactggacaaaggccaaagcgttacagccaattctggaaatggaa
gatccagaaacagcgttaatctttgtgcgtaccagaagaactgcggcagaactcaccaac
caactgcaagcagctggtcacagtgtcgatgaatatcacggtgatttgtcccaacaagcc
agagaaaggttactaacccgcttccgaaatcgtcaagtgcgctgggtagtagcaactgat
attgctgcacgcggtttagatgttgaccaactatctcacgtgattaattacgacttacct
gatagcgtggaaacctacgtgcatcggattggtcggactggtcgtgctggtaaagaaggt
acagcaattaccttagttcagcccttcgagcgtcgcaaacagcaaatatttgagcgtcat
aaccgtcaaagctggcaattactgtcgattcccacacgggcgcagattgaagcacggcac
atcaacaaattgcaagagcaagtcagagaagccctaagcggtgaaagactggcttccttc
ttacccattgtcagcgaattaattgaacagtatgatgctcatgcgatcgctgctgctgca
ctgcaacttgcttatgatgaaacccgtcctgcttggttaagctctgaggtggaaattcct
gaagaagttcccgtagctaaacccaaaatcgtcaagcgtcgtgaattttctggtgacaga
aatcgttcttggaacaaatcagacgctaacaacggtgatgaaggacgctccacacccaag
cctaaactgcgctcaggtcgccgcgaagcccccgtttctgccaatcaaaagctaggttca
tctacagcaagagaatctgcttcttag
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