Nostoc piscinale: ACX27_25765
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Entry
ACX27_25765 CDS
T09766
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
npz
Nostoc piscinale
Pathway
npz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
npz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACX27_25765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npz03400
]
ACX27_25765
Enzymes [BR:
npz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACX27_25765
DNA repair and recombination proteins [BR:
npz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACX27_25765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALF55465
UniProt:
A0A0M4SUY3
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All DBs
Position
6049825..6053334
Genome browser
AA seq
1169 aa
AA seq
DB search
MAFSSIVRALARSPLTTELLSKLNRQQDLRLNGIPRLPKGLVASALAQNSGRNLFVVCAT
LEEAGRAYAQLEAMGWSTVHFYPTSEASPYEPFDPETEMTWGQMQVLADLVKGQESTVNG
QNKTIAVVATTGALQPHLPPPEAFTPLSLTLTKGMEFDLNTFSTKITTLGYERVPLVETE
GQWSRRGDIVDVFPVSSELPVRLEWFGDEIEQIREFDPSTQRSALDKINQVVLTPTSFTP
IILDALKDNAEFQVLKEELNTDSELETEETGILEGSRRFLGLAFEKPASILDYLPENTLI
AIDEPEQCHAHSDRWVENAEEQWSLGTGELDLGSLQLPKIHRSFDDCLAEVTQFPTVYLS
EIAEENNGINLASRSVPVTPHQFGKLAETLRQERDRNFSIWLISAQPSRSVSLLQEHDCP
AQFIPNPRDYQAIEKQQINHVPVALKYSGLAELEGFILPTYRLVVVTDREFYGQHSLATP
GYIRKRRKAASKQVDPNKLRPGDYVVHRSHGIGKFVKLESLTINDETRDYIVVQYADGLL
RVAADQVGSLSRFRATGDKPPELHKMTGKAWDNTKNRVRKAIKKLAVDLLKLYAARSQQQ
GYAYPQDMPWQEEMEDSFPYQPTTDQLKAVQDVKRDMESDRPMDRLVCGDVGFGKTEVAI
RAIFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYPVNVGLLNRFRTAEERRNIQKRL
ATGELDIVVGTHQLLGKGVSFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPI
PRTLYMSLSGIREMSLITTPPPTRRPIQTHLSPLNPETVRSAIRQELDRGGQVFYVVPRV
EGIEETTAKLREMIPGGRFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPR
VNTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRTLSDAARQRLRAIQEFTQL
GSGYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPQVDDTQI
DLNLTAFIPADYIPDIDQKMSAYRAVAAAKSKDELTQIAAEWSDRYGTLPVPANQLLRVM
ELKQVAKKLGFSRIKPENKQHVILETPMEEPAWNLLAANLPEHLKTRFVYSPGKVTVRGL
AVMKADQQLQSLIDAMGRMQGAIAEAAVV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atggcattttcttcgattgtgcgtgccttggcgcgatcgccactcaccacagaactactt
tctaagctcaatcggcaacaagatttacgcttaaatggtattccccgtctacccaagggc
ttggtagcatcggcactagcacaaaattcaggaaggaatttatttgttgtttgtgcaacg
ctggaggaagccggacgcgcctacgctcaattagaggcgatgggctggtcaacagtacat
ttctacccaacttccgaagcatctccttacgaaccttttgaccccgaaactgaaatgacc
tggggacaaatgcaggttttggcagatttggtcaagggtcaagagtcaacagttaatggt
caaaataaaaccatagcggtggttgctactacgggagctttacagccgcatttgccgcca
ccagaggcttttacacctctaagtctaaccttgaccaaaggaatggaatttgacctgaat
accttcagtaccaaaattacaaccttgggttacgagcgagtacctttagttgaaacagaa
gggcaatggagtcgacgtggtgatattgttgatgttttccctgtttcttcagaattgcca
gtacgcttagagtggtttggcgacgaaatcgagcagattagagaatttgacccgtcaact
cagcgttctgctcttgacaaaattaaccaagtcgtgcttacaccgacgagcttcactccg
atcatcctggatgcacttaaggataatgctgagttccaagttttgaaagaggagttaaat
actgactcagaacttgagactgaagaaacagggattttagaaggaagtcggcggtttttg
gggctggcgtttgaaaaacccgcatcgattttagattatttacctgaaaatactttaatt
gctattgatgaaccagaacagtgtcatgcccatagcgatcgctgggtggaaaatgccgag
gaacaatggtcgctagggactggggaattagatttaggttctctacaattaccgaaaatc
catcggtcgtttgatgattgtctggcggaagttacccaatttccaactgtttatttatcg
gaaattgccgaagaaaacaacgggattaatttagcgagtcggtctgtaccagttacaccg
catcagtttggtaaacttgccgagacgctaagacaagaacgcgatcgcaatttctcgatc
tggctaatttccgcccaaccttcccgttctgtctctctattacaagaacacgactgtccg
gcgcagtttatccccaacccgcgcgactaccaagcaattgaaaagcagcaaatcaatcat
gtaccagtcgccttaaaatattcgggcttggcggaactggaaggatttattctgccgact
taccgcttggtagttgtcaccgaccgcgaattttacggtcagcactccctcgccacgcca
ggatatatccgcaagcggcgtaaggctgcttctaagcaagttgacccgaataaactgcgt
ccgggagattatgtagttcacagaagccacgggattggtaaatttgtcaagctggaaagt
ttgacgattaacgatgaaacccgtgattatatcgtcgtgcagtacgctgatgggctttta
cgggtagcggctgaccaagttggttctttgtcaaggttccgcgccacaggcgataaaccc
ccagaactgcacaaaatgactgggaaggcttgggacaataccaagaaccgcgtccgcaaa
gctattaagaaattagcagtagacttgctgaaattgtatgcagcgcgatcgcagcaacaa
ggttacgcctatcctcaagatatgccttggcaagaggaaatggaagattccttcccttac
caacctaccaccgaccagcttaaagctgtccaagatgtcaaacgcgacatggaaagcgat
cgcccaatggatcggttagtttgtggtgacgttggtttcggcaaaactgaagttgcaatc
cgcgcgatttttaaagctgtgacggctggtaaacaagtcgcactcttagcacctacaact
atcctcacccagcaacactaccacaccctcaaagaacgatttgcaccttatcctgtgaat
gtcggcttactcaaccgcttccgtactgctgaagaacgtcgcaatattcaaaagcgatta
gcaacaggtgagttagatatcgtcgtgggtacacaccaacttttaggtaaaggcgtatca
ttccgcgacttaggcttgttggttgtggatgaagaacaaagatttggtgtgaaccaaaaa
gagaaaatcaaatctttgaaaactcaggttgatgtactaacactttccgccacacccatt
ccccgaaccttgtatatgtccttatctggtattcgggaaatgagtttgattaccacacca
cccccaacccgccgaccaattcaaactcacctttcacccctgaatcccgaaacagtccgc
agtgcaattcgtcaagaactagaccgaggcggacaggtgttttatgtagttccgcgagtt
gaagggattgaagaaactacagccaaattgcgcgagatgataccgggagggagatttgcg
atcgctcacgggcagatggacgaaagcgagttagaatcaaccatgctcaccttcagcaat
ggtgacgcagatatcttggtatgtacaacaattattgaatctgggttagatattccccgt
gttaacaccatcctaatcgaagacgcgcaccgttttggactatcgcaactatatcaatta
cgcggtcgtgttggacgtgcaggtattcaagcccatgcctggttattctatcccaagcag
cgcaccttatctgatgcggcgcggcaaaggttacgggcaatacaagaatttacccaactc
ggttccgggtatcaactagcaatgcgcgacatggaaatccgaggcgtgggtaacttgcta
ggtgcagaacaatccggtcaaatggatgcgatcggttttgacttgtacatggaaatgtta
gaagaggcgattcgagaaattcgcggtcaagaaattccccaagttgatgatacgcaaatt
gacctcaacctcaccgcatttattcccgccgattacattccagatattgatcaaaagatg
agtgcttaccgtgcggtggctgcggcgaaatcgaaagatgaactaacgcagattgctgct
gaatggagcgatcgctatggtactttacccgtccccgccaatcaacttttgcgcgtcatg
gaactgaaacaagtagcgaaaaaattaggatttagccgcatcaaaccagagaacaaacaa
cacgtaattttagaaacaccaatggaagaacctgcatggaatttacttgcagcaaactta
ccagaacatctcaaaacacgctttgtttactctcctggtaaagtcacagtccgcggttta
gctgtaatgaaagccgaccaacaattgcaaagtttgattgatgcaatggggagaatgcag
ggagcgatcgcagaggctgctgttgtttaa
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