Nostoc piscinale: ACX27_27940
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Entry
ACX27_27940 CDS
T09766
Symbol
rpoC1
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
npz
Nostoc piscinale
Pathway
npz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
npz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACX27_27940 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npz03021
]
ACX27_27940 (rpoC1)
03400 DNA repair and recombination proteins [BR:
npz03400
]
ACX27_27940 (rpoC1)
Enzymes [BR:
npz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACX27_27940 (rpoC1)
Transcription machinery [BR:
npz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACX27_27940 (rpoC1)
DNA repair and recombination proteins [BR:
npz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACX27_27940 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
ALF55820
UniProt:
A0A0M4T618
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All DBs
Position
6506528..6508405
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AA seq
625 aa
AA seq
DB search
MRAAQTNQFDYVKIGLASPERIRQWGERTLPNGQLVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKG
IPSYIAILLDMPLRDVEQIVYFNSYVVLSPGNAETLTYKQLLSEDQWLEIEDQIYSEDST
LQGVEVGIGAEALLRLLADINLEQEAESLREEISTAKGQKRAKLIKRLRVIDNFIATGSK
PEWMVMTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLNIHQCGLPREMAIELFQPFVINRLIRSGMVNNIKAAKKLISRNDPSVWDVLE
EVIEGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLASNNILSPATGKPIITPSQDMVLGAYYLTAENPHATKGAGKYFASLED
VIMAFEQQQIDLHAYIYVRFDGEVESDQPDTEPLEVTNNDDGTRTLLYKFRRVREDSQGN
LISQYIRTTPGRVIYNKAIQEALVS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagagcagcccaaactaatcagtttgactacgtaaaaatcggtttggcatcaccagaa
cgcattcggcaatggggcgaacgcaccctacccaatggtcaattagtaggtgaagtcacc
aaaccagaaacgattaactaccggactttaaaaccagagatggatggcttattttgtgag
cgcatctttggcccggcaaaagattgggaatgtcactgtggtaagtacaagagagtccgc
cacagagggattgtttgtgaacgctgtggtgtagaagtcaccgaatctagagtacgccgc
caccggatggggtatatcaaactggctgcaccagtcgctcacgtttggtatctcaaaggt
atacccagctatattgccatcctgttggacatgcctttgcgggatgtagaacaaatagtg
tatttcaactcttatgttgttctcagccctggcaatgccgaaactttaacttataagcaa
ctactgagtgaagaccagtggttggaaatagaagaccaaatttacagcgaagattctacc
ttacaaggggtagaagtgggcattggtgcagaagcactgctgcgtttgttagctgatatt
aatttagagcaagaagcagaaagtttgcgggaagaaattagtacagctaaaggtcaaaaa
cgcgccaagctgattaagcggctgcgggtaattgacaacttcattgcgactggttctaaa
ccagagtggatggtgatgaccgtcatccccgtgattccgccagatttgcgcccaatggtg
caacttgatggtggacggtttgcaaccagcgacttgaatgatttatacagacgtgtaatc
aaccgcaacaaccgactggcacgcctacaggagattttggcaccagaaattattgtgcgg
aacgaaaagcggatgctgcaagaagcggtagacgcgctgattgataacggtcgtcggggt
cggacggtagttggtgctaataaccgcccactaaaatctttgtctgacattattgaaggt
aagcaaggacgtttccggcaaaacttgttaggtaaacgagttgactactctggacggtcg
gtaattgtggtggggccgaaactgaatattcaccagtgtggcttaccaagagaaatggcc
attgagctatttcaaccatttgtgattaaccgcttaattcgtagcgggatggtgaataac
attaaggctgccaagaagctgatatcgcggaatgatcccagtgtttgggatgtgctggaa
gaggtgatcgaaggacacccagtgatgctcaaccgcgcacccacactacaccgtttgggg
attcaagcttttgaaccaattttagtggaagggcgagccattcaattacatccactggtt
tgtccggcgtttaacgctgacttcgacggcgaccaaatggcggtacacgtacccctgtcc
ttagaaagtcaagcggaagcaagattgttgatgttggcttctaataatattctgtcgcca
gctacaggtaaaccaatcattacacctagccaagatatggtattgggggcttactacctg
accgccgaaaacccccatgctaccaaaggtgctggtaagtactttgcttccctcgaagat
gtaattatggcttttgagcaacagcaaatagacttacacgcctatatctacgtgcggttt
gatggtgaggttgaatcagatcaacctgatacagaacccttggaagttactaataacgat
gacggtacccggacattactgtataagttccgccgagtccgagaagattcccaaggaaat
ttgatttctcagtacatacgcacaacacctggccgcgtcatttacaacaaggcaattcag
gaagcactagtaagttaa
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