Novosphingobium resinovorum: BES08_03385
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Entry
BES08_03385 CDS
T04490
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nre
Novosphingobium resinovorum
Pathway
nre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BES08_03385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nre03019
]
BES08_03385
03009 Ribosome biogenesis [BR:
nre03009
]
BES08_03385
Enzymes [BR:
nre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BES08_03385
Messenger RNA biogenesis [BR:
nre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BES08_03385
Ribosome biogenesis [BR:
nre03009
]
Prokaryotic type
rRNA helicases
BES08_03385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AOR75896
UniProt:
A0A1D8A1G7
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All DBs
Position
764843..766648
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AA seq
601 aa
AA seq
DB search
MTFPQIPAPLAEAITGHGYETLTPVQAAVTESEAHGRDLVVSAQTGSGKTVAFGLAMADE
LLADDELAFAVKPLALAIAPTRELAQQVSRELEWLYAKTHARIVTCVGGMDPVKERKQLE
RGAAIVVGTPGRLRDHLERGKLDLSALRAVVLDEADEMLDMGFREDLEELLDATPETRRT
LLFSATMPRPIEALAQRYQKNALRISTVGENRGHGDIAYKAVTVAPSDIEHAVVNLLRFY
DAETAILFCATRDNVKHLHATLVERGFSAVALSGEHSQNERNNALQALRDRRAKVCVATD
VAARGIDLPSLSLVVHVEIPRDAETLQHRSGRTGRAGKKGTAVLLVPYPRRRRVEMMLRG
ARIEAEWGEAPTPEAIRAQDRDRLLEKLLAPVEVEDDDRELAKVVLETLSAEDVAAALVR
AHRAAMPQPEELLGNSPESRQKRERPGFDDVVWFRMNVGRDERAEARWILPVLCRRGHVT
RDAVGQIRINGDQTYFQIPAAQAEQFERAVARTAREDGEYEATILIERAPDAPRDAARHR
SRDREGPQGRGRRPHGNGPRSDGPGGEGSAPYRARPTGPRQDRPAGGGGGKPFHKKPKKS
W
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgacttttccgcagattcccgcgcctctcgccgaagccatcaccggacatggctatgaa
accctgacccctgttcaggccgccgtgaccgaatcggaggcgcatggccgcgacctcgtc
gtctcggcgcagaccggctcgggcaagaccgtcgcctttggccttgccatggccgacgaa
ctgctcgccgacgacgaactcgccttcgcggtcaagccgctggcactcgccatcgcgccg
acccgcgaactggcgcagcaggtcagccgcgagctggaatggctttatgccaagacccac
gcccgcatcgtcacctgcgtcggcggcatggacccggtgaaggagcgcaagcagctggaa
cgcggcgcggcgatcgtcgtcggcacgccgggccgtctgcgcgaccatctggagcgcggc
aagctcgacctctcggccctgcgcgccgtcgtactcgacgaagccgacgaaatgctcgac
atgggcttccgcgaggatctggaagaactgctcgacgcgacgccggaaacccgccgcacg
ctgctgttctcggcgaccatgccccgcccgatcgaggcgctggcccagcgttaccagaag
aacgcgctgcgcatctccactgtcggcgagaaccgcggccatggcgacatcgcctacaag
gctgtcaccgtcgcgccttccgacatcgagcatgcggtggtgaacctgctgcgcttctac
gatgccgagaccgcgatcctgttctgtgccacgcgcgacaacgtgaagcacctgcatgcc
accctggtggagcgcggcttctcggccgtggcgctttcgggcgagcattcgcagaacgag
cgcaacaacgcgctgcaggcgctgcgtgaccgccgcgccaaagtctgcgtcgccaccgac
gtcgccgcgcgcggcatcgatctgccgtcgctcagcctcgtcgtccacgtcgagattccg
cgcgatgcagagaccctgcagcaccgctcgggccgtaccggccgcgcgggcaagaagggc
acggcggtcctgctggtgccgtatccgcgccgccgccgcgtcgagatgatgctgcgcggc
gcccgcatcgaggccgagtggggtgaggccccgacgcccgaggcgatccgtgcgcaggac
cgtgaccgcctgctcgaaaagctgctggcgccggtcgaagtcgaggacgacgaccgcgaa
ctggcgaaggtcgtgctggaaacgctgagcgcagaggacgtcgctgccgcgcttgtgcgc
gcgcaccgcgccgcgatgccgcagcccgaggaactgctcggcaattcgcccgaatcccgc
cagaagcgcgagcgtccgggcttcgacgacgtcgtgtggttccgcatgaacgtgggccgc
gacgagcgggccgaagcgcgctggatcctgccggtgctgtgccgccgcggccatgtcacc
cgcgatgcggtcggccagattcgcatcaacggtgaccagacctacttccagatccctgcc
gcgcaggccgagcagttcgaacgcgccgtcgcccgcaccgcgcgtgaagacggtgagtac
gaagccaccatcctcatcgagcgtgcgcctgatgcgccgcgtgacgccgcccgtcaccgc
agccgcgaccgcgaaggcccgcagggtcgtggccgccgtccgcacggcaatggtccgcgt
tccgatggtcccggcggcgagggctcggccccgtaccgcgcgcgcccgaccggtccgcgc
caggaccgtccggcgggtggcggcggcggcaagccgttccacaagaagccgaagaagagc
tggtaa
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