Novosphingobium resinovorum: BES08_03500
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Entry
BES08_03500 CDS
T04490
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nre
Novosphingobium resinovorum
Pathway
nre02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nre00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BES08_03500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nre03021
]
BES08_03500
Transcription machinery [BR:
nre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BES08_03500
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AOR75917
UniProt:
A0A1D8A1E2
LinkDB
All DBs
Position
complement(784555..786585)
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AA seq
676 aa
AA seq
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MSKNDTNGADNEGTDAPLIDLNEGSIKKLIARAKRRGVITYDELNEALPQDMSSDQIEDI
TSALNEMGVNIVDNDEDAESQENDDRDSEDDNDDSEGDEVSPRVNVDPAKKKETVERTDD
PVRMYLREMGAVELLSREGEIAIAKRIEAGRDMMILGLCESPITFHAIIQWSEALNNGEM
QLREILDLDAMLSKEPAPEALSEDGESEDDGEISEKTAGPSFKDDDSDDEDNSEELDEDG
NPIPKRQAEEEEEDNTLSLAQMEAALKPEALEKFLLITELFQTFERLQRDRLEALALGID
FPAAEEDQYQQLREDLTAQVESVKFHATKIEYLVDNLYAFNRRLTTLGGQMLRLAERHKV
KRTDFLESYVGRELDDTWITDVAKKDKKWAAFAENEADPVERIRLEVSDIAAATGMALPE
FRRIVNMVQKAEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGRE
PTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQ
ANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRK
LKHPSRSRKMRSFLDQ
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaacgacaccaacggcgcggacaacgagggtacggacgcaccgctgatcgac
ctcaacgaaggttcgatcaagaagctgatcgcgcgtgccaagcgtcgcggcgtcatcact
tacgatgagctgaacgaggcgctgcctcaggacatgtcctcggaccagatcgaggacatc
acctcggctctgaacgagatgggcgtcaacatcgtcgacaacgacgaggatgccgaaagc
caggaaaacgacgaccgcgattcggaagacgataacgacgacagcgaaggcgatgaagtc
tcgccgcgcgtcaacgtcgatcccgcgaagaaaaaggaaacggtcgagcgcaccgacgac
ccggtgcgcatgtacctgcgcgagatgggcgcggtcgagctgctcagccgcgagggcgaa
atcgccatcgccaagcgcatcgaagccggccgcgacatgatgatcctgggcctgtgcgaa
agcccgatcaccttccacgccatcatccagtggtccgaggcgctcaacaacggcgagatg
cagttgcgcgagatcctcgatctcgacgcgatgctttcgaaggagcccgcgcccgaagcc
ctgagcgaggacggcgagagcgaggacgacggcgaaatcagcgaaaagaccgccggtccc
tcgttcaaggacgacgattccgacgacgaggacaactccgaggaactcgacgaggacggc
aacccgattcccaagcgtcaggccgaggaagaggaagaagacaacaccctctcgctcgcg
cagatggaagcggccctcaagccggaagcgcttgagaagttcctgctgatcaccgaactg
ttccagactttcgagcgcctgcagcgcgatcgtctggaagcgctggcgctgggcatcgat
ttcccggccgccgaggaagaccagtaccagcagcttcgtgaagacctcacggcgcaggtg
gaatcggtcaagttccacgcgaccaagatcgaatatctggtcgacaacctctacgccttc
aaccgccgcctgacgacgctgggcgggcaaatgctgcgtctggctgagcgtcacaaggtg
aagcgcaccgacttcctcgaatcctacgtcggccgcgaactggacgatacgtggatcacg
gacgtcgccaagaaggacaagaagtgggccgccttcgccgagaacgaagccgatccggtc
gagcgtatccgtctggaagtctcggacatcgccgccgcgacgggcatggcgcttcccgag
tttcgccgcatcgtgaacatggtccagaaggcggagcgtgaagcgcgcatcgccaagaag
gaaatggtcgaggcgaacctgcgcctggtgatctcgatcgccaagaagtacaccaaccgg
ggtctgcaattcctggatctcatccaggaaggcaacatcggtctgatgaaggcggtcgac
aagttcgagtaccgccgcggctacaagttctcgacttatgcgacctggtggatcaggcag
gcgatcacgcgctcgatcgcggatcaggcccgcacgatccgcatcccggtccacatgatc
gagacgatcaacaagctggtgcgcaccagccgtcagttcctccacgaacagggccgcgag
cctacgcccgaggaaatggccgagcgtctgtcgatgccgctcgagaaggtgcgcaaggtg
atgaagatcgccaaggagccgatctccctcgaaacgccgatcggcgacgaggaggattcg
cacctcggcgatttcatcgaggacaagaacgcgatcattccggtggacgcggcgatccag
gcgaacctcaaggaaacggtcacccgggtccttgcgagccttaccccgcgtgaggagcgc
gtgctgcgcatgcgcttcggcatcggcatgaacaccgatcacacgctggaggaagtcggc
cagcagttctcggtgacgcgcgaacgcatccgccagatcgaggccaaggcgctgcgcaag
ctcaagcacccgagccggtcgcgcaagatgcgctcgttcctggaccagtaa
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