Novosphingobium resinovorum: BES08_05065
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Entry
BES08_05065 CDS
T04490
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nre
Novosphingobium resinovorum
Pathway
nre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BES08_05065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nre03019
]
BES08_05065
03009 Ribosome biogenesis [BR:
nre03009
]
BES08_05065
Enzymes [BR:
nre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BES08_05065
Messenger RNA biogenesis [BR:
nre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BES08_05065
Ribosome biogenesis [BR:
nre03009
]
Prokaryotic type
rRNA processing factors
BES08_05065
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CHP02642
Motif
Other DBs
NCBI-ProteinID:
AOR76192
UniProt:
A0A1D8A289
LinkDB
All DBs
Position
1108259..1111054
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AA seq
931 aa
AA seq
DB search
MATRMLIDARHPEETRVAVVKGNRIEEFDFESTERKQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPKEDREALLAEEAAHAEEEAALRATEGDDEDEDGDYNDD
GGLTEVDTSEKDHVATIEDGAVENPFHADDEGEHEGEHGDEESEGNNRRGRGRRRQGGRP
SGRSKEADDLRAKRMALRRRYKIQDVIQRRQVLLVQVVKEERGNKGAALTTYLSLAGRYC
VLMPNSSHGGGISRKISSASDRKRLKSIIAEMDLPRSMGCIVRTAGLQRTKTEIKRDFDY
LARLWDELREQTMRSAAPALIHSDSDLIKRAIRDIYNRDIEEVIVEGEAGYHAAKDFMKL
LMPSHGRKVKPYADPVPLFQRFGAEDQLTAMYDPVVQLRSGGYIVINPTEALVSIDINSG
RATKEHGIEQTAVATNLEAAAEIARQLRLRDMAGLVVIDFIDMEYGSNVRKVEKAMKEAL
KNDRARIQVGRISSFGLMEMSRQRLRTGVLEATTRSCPHCDGTGLVRTASSAGLSALRLI
EDEAAKGKGIVVSLFASTEAAVYMLNAKRTDLADIEERYGVTVEVIPEGENEGAKMRVMS
SGPRNEFVPRFEPIAEDVEDDFVEEEYEDEELEAEEAAERTEASEDGEGRRSKRRKRRRG
RNRDRREDGAETAEVEAADASDEGDDAEDEGESIVEAEGTEAEGDDTNAPKKRRRRGGRR
RRGRRGEGEAENGAEGEDAVIGAEGLELAAEEAALPVADGGISAEPIVPAEPVAEEAPAK
PKRTRRKKADVEAEAVVEAPAAPEPVAEEAPAKPKRTRRKKVDVEAEAVVEAPAAPEPVA
EEAPAKPKRTRRKKADVEAEAAPAPAPEPVAEEAAAKPKRTRRKKADVEAEAAPAPVAEP
VAEPEAVAEAASADDAAPAPRRGWWQRTFGE
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggcaacccgcatgctgatcgatgcgcgccacccggaagaaacgcgggtggcggtcgtc
aagggaaaccgcattgaagagttcgacttcgagtcgaccgaacgcaagcagatcaagggt
aacatctacctcgcgaaggtgacgcgcgtggagccttcgctccaggccgcgttcgtggac
ttcggcggcaaccgccacggcttcctcgccttcagcgaaatccacccggactactaccag
atccccaaggaggaccgcgaggccctgctggcggaagaagccgcccatgccgaggaagaa
gccgccctgcgcgccaccgaaggtgacgacgaggacgaagacggcgactacaacgacgat
ggcggcctcaccgaggtcgatacgtccgagaaggaccatgtcgccacgatcgaggacggc
gcggtagagaacccgttccacgccgacgacgaaggcgagcacgagggcgagcacggcgac
gaagagtccgaaggcaataaccgtcgcggccgtggccgtcgccgccagggtggccgtccc
tcgggccgctcgaaggaagccgacgacctgcgcgccaagcgcatggcgctgcgccgccgc
tacaagatccaggacgtcatccagcgccgccaggtgctgctcgtccaggtcgtcaaggaa
gagcgcggcaacaagggcgcggccctcaccacctaccttagcctcgcgggccgctactgc
gtgctcatgccgaattcgagccacggcggcggcatcagccgcaagatcagctcggcctcg
gaccgcaagcgcctgaagtcgatcatcgccgaaatggacctgccccgctcgatgggctgc
atcgtccgcacggcgggcctccagcgcaccaagaccgagatcaagcgcgacttcgactac
ctcgcccgcctgtgggacgagctgcgcgaacagaccatgcgctcggccgctccggcgctg
atccactcggacagcgacctcatcaagcgcgccatccgcgacatctacaaccgcgacatc
gaggaagtgatcgtcgagggcgaggccggctaccacgccgccaaggacttcatgaagctc
ctgatgcccagccacggccgcaaggttaagccttacgccgatcccgtcccgctgttccag
cgcttcggcgccgaggaccagctgaccgcgatgtacgaccccgtcgtgcaactgcgttcg
ggcggctacatcgtcatcaacccgaccgaggcactggtttcgatcgacatcaactcgggc
cgcgccaccaaggagcacgggatcgagcagacggcggttgccaccaacctcgaagccgcg
gccgaaatcgcccgccagctgcgcctgcgcgacatggccggcctcgtcgtgatcgacttc
atcgacatggagtacggctccaacgtccgcaaggtcgagaaggcgatgaaggaagcgcta
aagaacgaccgcgcccgcattcaggtcggccgcatttccagcttcggcctgatggaaatg
agccgccagcgcctgcgcaccggcgttctcgaagcgaccacccgctcgtgcccgcactgc
gacggcaccggcctcgtccgcaccgccagctccgccggtctctcggcgctgcgtctgatc
gaggacgaggcggccaagggcaagggcatcgtggtctcgctgttcgcctccaccgaggcg
gcggtctacatgctcaacgccaagcgcaccgacctcgccgacatcgaggaacgctacggc
gtaaccgtcgaagtcatccccgagggtgagaacgaaggcgccaagatgcgcgtcatgtcg
tcgggtccgcgcaacgagttcgtgccccgcttcgagcccatcgccgaggacgtcgaggac
gacttcgtcgaggaagagtacgaggacgaagagctggaagccgaagaggctgccgagcgc
accgaagcgtccgaggacggtgaaggccgccgcagcaagcgccgcaagcgccgccgtggc
cgcaaccgcgatcgccgcgaggacggtgccgagaccgctgaggtcgaagctgccgacgct
tcggacgaaggcgacgacgccgaagacgaaggcgagagcatcgtcgaagccgagggcacc
gaggccgagggtgacgataccaacgcacccaagaagcgccgccgtcgcggtggtcgccgt
cgtcgcggtcgtcgcggtgaaggcgaggccgagaacggtgccgagggcgaggatgccgtg
atcggcgccgaaggcctcgaactggctgccgaagaagccgcgctgccggtcgccgatggc
ggcatcagcgccgagccgatcgtcccggccgaaccggtcgccgaggaagcgcctgcaaag
cccaagcgcactcgccgcaagaaggcggacgtcgaggccgaagccgtcgtcgaagcaccc
gcagcgcccgaaccggtcgccgaggaagcgccggcaaagcccaagcgtacccgtcgcaag
aaggtggacgtcgaagccgaagccgtcgtcgaagcgcccgcagcgcccgaaccggtcgcc
gaggaagcgcctgcaaagcccaagcgcacccgccgcaagaaggcggacgtcgaggccgaa
gccgctccggcaccggctcccgagccggttgcggaagaggctgcagcaaagcccaagcgc
acccgtcgcaagaaggcggacgtcgaggccgaagccgctccggcaccggtcgccgagccg
gtcgccgaacccgaagcagtcgccgaagccgcgtcggctgacgatgccgctccggcaccg
cgccgtggctggtggcagcgcactttcggcgagtaa
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