Novosphingobium resinovorum: BES08_26155
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Entry
BES08_26155 CDS
T04490
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nre
Novosphingobium resinovorum
Pathway
nre02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nre00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BES08_26155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nre03021
]
BES08_26155
Transcription machinery [BR:
nre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BES08_26155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AOR80373
UniProt:
A0A1D8AE14
LinkDB
All DBs
Position
pSA2:239203..241230
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AA seq
675 aa
AA seq
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MSPNDRNGDIDPAILDAGEGLIAQFLARAKRRGIVTVSDLNAALPQDQLTTDQIEDVMSA
MSEMGINVVENDEAEDDADPAVDREGEDDNDREDEPDEEDEASPRRVTESKSADSLGRTD
DPVRMYLREMGTVEFLSREGEAAIAKRIEAGRDMMIQGLCESPLTFDAIIQWSQALNAGE
MQLREILDLDAMIAKEPTPDNLTEDGQGDVSGEISETTAGPSLKDDTDQDANAEEVDEDG
NSVGGGADAEDDEDNSLSVAQLEAALMPEVLEMFAVITDLFRQFQKVQGERLEALALGID
FPADKEERYHELREELTAKLESVKFHAGRIEHLVDNLFVLNRRLTTLGGQMLRLAERHKV
KRADFLETYVGRELDDSWLSEMATRDKKWAAFAAAEGDAAERIRSDVADIAAAAGVPLPE
FRRIVNMVQKAEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDIIQEGNIGLMKAVD
KFQYRRGFKLSTYATWWIRQSITRSIADQARTIRIPVHMIETINKLVRTNRQYLHEHGRE
PTPEEMAERLSMPLEKVKRVLKIAKEPISLESPVGDEDDSHLGDFIQDANAIIPVDAAIE
SNLKEMITRTLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRK
LKHPSRSRIMRTFLD
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgagtccaaatgaccggaacggggacatcgaccctgcaatacttgatgcgggcgagggt
ttgattgcccagttcctggcacgggctaagcgccgcggcatcgtgaccgtcagcgatctg
aatgctgctttgcctcaggatcagctgactactgatcagatcgaggacgtgatgtcggcg
atgtcggaaatgggcatcaacgtcgtcgagaacgatgaggcagaagacgacgccgatccc
gctgtcgaccgggaaggcgaagacgacaatgaccgcgaggacgaaccggacgaggaggac
gaagcatccccgcggagggtgaccgaaagcaagagcgccgactccctgggccgaaccgat
gacccggtgcggatgtacctgcgggaaatgggcacggtcgaatttctgagccgcgaaggc
gaagcggccattgccaaacgtatcgaagccggccgggacatgatgatccagggtctgtgc
gaaagtccgctcacgttcgatgccattatccagtggtctcaggcgctgaacgccggcgag
atgcagctgcgcgagattttggatctcgatgccatgatagcgaaagagccgacgcccgac
aacctgactgaagacgggcagggtgacgtcagcggcgagatcagtgagacgacagcgggt
ccttcgctcaaggacgacaccgatcaagacgccaacgccgaagaagtggacgaggacggt
aattcggtcggcggcggcgctgacgccgaggacgacgaagacaattccttgagcgtagcg
cagctggaggccgcactcatgcccgaagtgcttgagatgttcgccgtcatcacggacttg
ttccggcaattccaaaaggtccagggcgagcgtctcgaggcgctcgccctcgggattgat
ttcccggcagacaaagaagagcgatatcacgagctgcgcgaggaactgaccgcaaagttg
gaatcggtgaagttccacgcagggaggatcgaacaccttgtcgacaatctctttgtcctg
aaccggcgtctcaccacgctggggggccagatgctccgcctggctgagcgtcacaaggtc
aagcgtgccgacttcctggaaacctacgtcggccgcgagctcgatgatagctggctgtcc
gaaatggcaacgcgcgacaaaaagtgggccgcattcgcggcagcggaaggcgatgcggcc
gaacgcattcgctccgacgtggcggacatagcggccgctgccggcgtgccgcttccggaa
ttccgccgcatcgtcaacatggtccaaaaggcggagcgagaggcgcgcatcgccaagaag
gagatggtcgaggcgaacctgcgcctcgtgatctcgatcgccaagaagtacactaaccgc
ggcctgcagtttctggatatcatccaggagggcaacatcggcctgatgaaggccgtcgac
aagttccagtaccgccgcggcttcaaactctccacctacgcaacctggtggatcaggcag
tcgatcacacgttcgatcgccgaccaggcccgtacgatccgtatcccggtccacatgatc
gagacgatcaacaagctggttcgaaccaaccgccagtatcttcatgagcatgggcgtgag
ccgacgccggaggagatggctgagcgcctgtcgatgccgctcgaaaaggtcaaacgggtc
ctcaaaatcgcgaaggagccgatctcgctggaaagcccggtcggtgatgaggatgacagt
cacctcggcgatttcatccaagacgccaatgcgatcattcccgtggacgcggcgatcgag
tccaacctcaaggaaatgattacccgcacgctggcttcgctcacaccgcgtgaagagcgc
gtgctgcgcatgcgcttcggcattggtatgaacaccgatcacacgctcgaggaggtgggc
cagcagttctcggtcactcgcgaacgcatccgccagatcgaagccaaggcgctgaggaaa
ctcaagcatccgagccgttcgcggattatgaggactttcctggattag
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