Novosphingobium resinovorum: BES08_29490
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Entry
BES08_29490 CDS
T04490
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nre
Novosphingobium resinovorum
Pathway
nre02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nre00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BES08_29490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nre03021
]
BES08_29490
Transcription machinery [BR:
nre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BES08_29490
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AOR81030
UniProt:
A0A1D8AFZ3
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All DBs
Position
pSA3:8313..10376
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AA seq
687 aa
AA seq
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MSRSERGKEMEEPIIEASRGSVAKFIAYAKRRGTITVDELNLALPQDQMTADQIEDVMAA
MSEMGIRVVENEDDPDADDAPASAASSDDSDGDRVPADEGANDGADDGREGVDGGAVFES
REPRPKKAENLGSTDDPVRMYLREMGAAEMLTREGEAAIAKRIEAGRDIMIQGLCESPLT
FHAIIEWSEALNAGHMQLREILDLDAMLAKEPQVETLGEDGGEISEKTAGPSFSDDEESE
EQDAAEVDEDGNPIASPRREEADAEEGGISLAQMEATLMPEALEKFALIAGLFHSFERLQ
ADRTEAAGLGIIFPEAREEQYLQLRAELTAEVESVKFHAAKIEQLIDNLYVSNRRLTTLG
GQMLRLVERYKVKRADFLEAYVGRELDDTWVAEMAGRDKKWAAFAAAEAGPAERIRNEVA
EIAATIGMALPEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYVNRGLQFLDLI
QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVR
ANRRFLHEHGREPTPEEMAEQLSMPLEKVKRVLKIAKEPVSLESPVGDEEDSSLGDFIRD
ENAVIPVDAAIEANLKEMITRSLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRE
RIRQIEAKALRKLKHPSRSRIMRAFLD
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgagcagaagcgaacgcggcaaagaaatggaagagccaatcattgaggcgagccgaggt
tcagtcgccaagtttatcgcctatgccaagcgtcgcggcacgatcaccgtcgacgagctg
aacctcgcgctgccgcaggaccagatgaccgccgaccagatcgaggacgtcatggcggcg
atgtcggagatgggcatcagggtcgtggagaacgaggacgatccggatgccgatgacgcg
cccgccagcgccgcctcgtcggacgacagcgacggggatcgggtgcctgccgacgaaggg
gccaatgatggcgccgacgatggcagagagggcgttgacggcggcgctgtcttcgagagc
cgtgagccgcgaccgaagaaggccgagaacctcggcagcacggacgatccggtgcgcatg
tacttgcgcgagatgggcgctgccgagatgctcacccgcgagggcgaggccgctatcgcc
aagcggatcgaagcaggccgcgacatcatgatccagggcttgtgcgaaagcccgctgacg
ttccatgcgatcatcgagtggtccgaggcgctcaacgccggccacatgcagctgcgcgaa
attctcgatctcgacgcgatgctggcgaaggagccgcaggtcgagacgttaggcgaagac
ggcggcgaaatcagcgagaagaccgcaggtccctcgttcagcgatgacgaggagtccgag
gagcaggacgccgccgaggtggacgaggatggcaatccgatcgccagcccgcgccgcgaa
gaggcggatgcggaggagggcggcatcagcctggcgcagatggaagcgacgctgatgccc
gaggcgctggagaagttcgcgctcatcgccgggctgttccacagcttcgagcggcttcag
gccgaccgaacggaagcggccgggctgggtatcattttccccgaggcgcgcgaggaacag
tacctgcaactgcgcgccgaactgaccgccgaggtggaatcggtcaagttccatgcggcc
aagatcgagcagttgatcgacaacctctacgtgtcgaaccgccgtctcacgacgttgggc
ggccagatgctgcgactggtcgagcgctacaaggtgaagcgcgccgatttcctcgaagcc
tatgttggccgtgagctggacgatacctgggtcgctgagatggcgggccgggacaagaag
tgggccgcgttcgccgccgccgaagccggccctgccgagcggatccgtaacgaggtcgcc
gaaatcgccgcaaccatcggcatggcgctccccgagttccgccggatcgtcaacatggtc
cagaagggcgagcgcgaggcgcgcatcgctaagaaggaaatggtcgaggcgaacctgcgt
ctggtgatctcgatcgccaagaaatacgtcaatcgcgggctgcagttcctcgacctgatc
caggaaggcaacattggcctgatgaaggcggtcgacaagttcgagtaccgccgcggctac
aagttctcgacgtacgcgacctggtggatccggcaggcgattacccgctcgatcgcggat
caggcccgcacgatccgcatcccggtccacatgatcgaaacgatcaacaagctggtccgc
gccaaccgccgcttcctccacgagcatggccgcgagcccacgcccgaggagatggctgag
cagctctcgatgccgctcgagaaggtcaagcgggtgctcaagatcgcgaaggagccggtg
tcactcgaaagcccggtgggtgacgaggaagacagctccctaggtgacttcatccgggac
gagaacgcggtgatccccgtggacgcggcgatcgaggcgaacctcaaggagatgataacg
cgttccttggcgtcgctcacgccgcgcgaggagcgcgttctgcgcatgcgcttcggcatc
ggcatgaacaccgatcacactctcgaggaagtcggtcagcagttctcggtaacccgtgaa
cgcatccgccagattgaggcgaaggcactgcggaagctcaagcaccctagccggtcgcgc
atcatgcgtgctttcctcgactga
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