Nitratireductor rhodophyticola: T8J41_04315
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Entry
T8J41_04315 CDS
T09622
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
nrh
Nitratireductor rhodophyticola
Pathway
nrh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nrh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T8J41_04315 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nrh03019
]
T8J41_04315 (pnp)
03016 Transfer RNA biogenesis [BR:
nrh03016
]
T8J41_04315 (pnp)
Enzymes [BR:
nrh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
T8J41_04315 (pnp)
Messenger RNA biogenesis [BR:
nrh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
T8J41_04315 (pnp)
Transfer RNA biogenesis [BR:
nrh03016
]
Prokaryotic type
tRNA degradation factors
T8J41_04315 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
WPZ15051
LinkDB
All DBs
Position
complement(940852..943005)
Genome browser
AA seq
717 aa
AA seq
DB search
MFKDHKVEIEWGGRPLTLETGKIARQADGAVLATYGETVVLATVVSAKEPKAGFDFFPLT
VNYQEKTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVDGYKNDTQVIATVLQH
DLENDPDIVAMVAVSAALTLSGVPFMGPIGAARVGYIGGEYVLNPHVDEMEETRLDLVVA
GTGDAVLMVESEAQQLPEDVMLGAVMFGHKNFQPVIDAIIKLAEVAAKEPRDFTPPDLSE
LEGEMLKIVENDLREAYKITDKQQRYDAVDAAKAKVKETLLPEGEEETRWSAEQVNTVFK
SLQGKIVRWNILDTGGRIDGRDLKTVRPIVAEAGILPRTHGSALFTRGETQALVVATLGT
GEDEQFIDSLTGTYKEAFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPGA
DQFPYTLRVVSEVTESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVL
SDILGDEDHLGDMDFKVAGTDEGITSLQMDIKIDGITEEIMQIALDQAKDGRLHILGEMA
KALSESRGELGEFAPRIEVMQIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA
SSNAKEIEAAKKWIHSITAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAQER
VGKTTDVVKEGDKVFVKLMGFDERGKVRLSMKVVDQETGKEIVQEKKKKEEAEDAEG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaggaccacaaagtagagatcgaatggggggggcgtccgcttacccttgaaacc
ggcaagattgcccgtcaggcagacggcgcagtgctcgccacctatggcgagaccgttgtt
ctcgcaaccgtcgtttccgcgaaagagccgaaggcgggcttcgacttcttcccgctgacc
gtcaactaccaggaaaagacctttgccgccggcaagatcccgggcggctacttcaagcgg
gaaggccgtccgagcgagaaggagacgctggtctcccgtctgatcgaccgtccgatccgc
ccgctcttcgtcgatggctacaagaacgacacccaggtcatcgccaccgtgctgcagcac
gatctggagaacgatccggacatcgtcgccatggttgccgtttccgcagcgctcaccctc
tccggcgttcccttcatgggcccaatcggtgcagcgcgcgttggctacatcggcggtgag
tacgtcctcaacccgcatgtcgacgagatggaagagaccaggctcgacctcgtcgtcgcc
ggtacgggcgatgccgttctgatggtggagtcggaagcccagcagcttcccgaggacgtc
atgctcggcgccgtcatgttcggccacaagaacttccagcccgtcatcgacgcgatcatc
aagctcgccgaagttgccgccaaggaaccccgcgacttcacgccgccggatctctccgag
ctcgaaggcgagatgctgaagatcgtcgagaacgatctgcgcgaagcttacaagatcacc
gacaagcagcagcgttatgacgccgttgacgccgccaaggcgaaggtgaaagagacgctt
ctgccggaaggcgaggaagagaccaggtggtcggccgagcaggtcaacaccgtcttcaag
agcctgcagggcaagatcgttcgctggaacatcctcgacaccggcggccgcatcgacgga
cgcgacctcaagacggtccgcccgatcgtggccgaggcaggcatcctgccgcgcacgcac
ggttccgcgctcttcacccgtggtgagacgcaggccctcgtggtcgccacgctgggcacc
ggcgaagacgagcagttcatcgactcgctcaccggcacctacaaggaggctttcctcctg
cactacaacttcccgccctactccgttggcgagacgggccgcatgggctcgcccggccgt
cgtgaaatcggccatggcaagctcgcatggcgcgccatccacccgatgctgccgggcgcc
gaccagttcccctacacgctgcgcgttgtctccgaagtcaccgagtccaacggttcgtcc
tccatggcaaccgtctgcggcacctcgctggcactcatggacgccggcgtgccgctggca
aagccggttgccggcatcgccatgggcctgatcaaggaagacgagcgcttcgccgttctc
tccgacatcctgggtgacgaagatcacctcggcgacatggacttcaaggtcgccggcacg
gatgagggcatcacctcgctccagatggacatcaagatcgacggcatcaccgaggagatc
atgcagatcgccctcgaccaggccaaggatggccgtctgcacattctcggcgagatggcc
aaggccctttccgagagccgtggtgagctgggcgagttcgcgccgcgcatcgaggtcatg
cagatcccgaccgacaagatccgcgacgtgatcggttccggcggcaaggtgatccgcgag
atcgtcgagaagaccggcgccaagatcaacatcgaggacgacggcacggtgaagatcgct
tcttccaacgccaaggaaatcgaggcagcgaagaagtggatccactccatcacggcagag
ccggaagtgggcgagatctacgaaggcacggtcgtcaagaccgccgacttcggcgcattc
gtgaacttcttcggtccgcgcgacggtctggtgcacatctcgcagctcgcgcaggagcgc
gttggcaagaccactgacgtcgtcaaggaaggcgacaaggtgttcgtaaagctgatgggc
ttcgacgagcgcggcaaggtccgtctctccatgaaggtcgtcgaccaggagaccggcaag
gagatcgtgcaggaaaagaagaagaaggaagaggccgaggacgccgaaggctga
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