Nitratireductor rhodophyticola: T8J41_08380
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Entry
T8J41_08380 CDS
T09622
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
nrh
Nitratireductor rhodophyticola
Pathway
nrh00300
Lysine biosynthesis
nrh00470
D-Amino acid metabolism
nrh01100
Metabolic pathways
nrh01110
Biosynthesis of secondary metabolites
nrh01120
Microbial metabolism in diverse environments
nrh01230
Biosynthesis of amino acids
Module
nrh_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
nrh00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
T8J41_08380 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
T8J41_08380 (dapF)
Enzymes [BR:
nrh01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
T8J41_08380 (dapF)
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GFIT
Motif
Pfam:
DAP_epimerase
PmbA_TldD_2nd
Motif
Other DBs
NCBI-ProteinID:
WPZ15800
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All DBs
Position
1788241..1789122
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AA seq
293 aa
AA seq
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MALEAAFAKMNGLGNAIIVADMRGRADRVTPEAARALNADPATRFDQIMAIHDPRLAGTH
NYIEIINSDGSQAQACGNGTRCVVQALAAETGEKVFTFQTIAGILNAEEHEDGLISVDMG
KPRFGWQDIPLAEEFRDTRMIELQAGPIDAPVLHSPSVASMGNPHAIFWVERDVNVYDLE
RFGPLLENHPIFPERANISIAQVTAENAMNLRTWERGAGLTLACGSAACAAAVSAARTGR
TGRHVTVTVPGGPLDILWREDDHVIMTGPAEWEFSGRFDPATGAWERETEGAA
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgaggcagcatttgcaaagatgaacggcctcggcaacgcgatcatcgttgcc
gatatgcgtggccgcgcggaccgggtgacgcccgaggccgcgcgcgcgctcaatgccgat
ccggctacgcgcttcgaccagatcatggcgatccatgacccgcgccttgctggcacccat
aactatatcgaaatcatcaattccgatggcagccaggcgcaggcctgcggcaatggcaca
cgatgtgtcgtgcaggcgcttgccgccgaaaccggcgagaaggttttcaccttccaaacc
attgccggcattctgaacgccgaggagcatgaggacgggctgatctctgtcgatatgggt
aagccacggttcggctggcaggacattccgttggccgaagagttccgcgacacgcgcatg
atcgagttgcaggccgggcccatcgatgcgccggtgctgcattcgccttccgttgcctcc
atgggcaacccccatgcgatcttctgggtcgagagagacgtcaatgtctacgatctggag
cggtttgggccgctgcttgaaaaccatccgatcttcccggaacgtgccaacatctccatc
gcgcaagtgacagccgaaaatgcgatgaacctgcgcacatgggaacgcggggctgggctt
acgctcgcctgcggttctgcggcctgcgcggctgcggtgtctgccgcgcgaaccgggcgc
acgggccggcacgtgacggtcaccgttccgggtgggccgctcgacattctgtggcgcgaa
gacgatcacgtcatcatgaccggtcccgccgaatgggaattctccggccgtttcgacccc
gccaccggggcctgggagcgcgagaccgagggagcagcctga
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