Nitratireductor rhodophyticola: T8J41_12220
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Entry
T8J41_12220 CDS
T09622
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nrh
Nitratireductor rhodophyticola
Pathway
nrh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nrh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
T8J41_12220 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nrh03021
]
T8J41_12220 (rpoD)
Transcription machinery [BR:
nrh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
T8J41_12220 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
ILEI
Motif
Other DBs
NCBI-ProteinID:
WPZ12943
LinkDB
All DBs
Position
2588635..2590632
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AA seq
665 aa
AA seq
DB search
MATKEKEEVETEREGSDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSGEVSSEQI
EDTMAMLSDMGINVVEEDEVAEDNDSNDSEEGGELTTQSGTAVATTTKKEPTDRTDDPVR
MYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRDELNEGKILLR
EIIDLEATYAGPEAKQAPVVQRPDEENKPAAEEKHKRTRGDDVTDVGGEGQPEEEDDEED
EANLSLAAMEAELKPGVMETLDFIADTYKKLRKLQDQKVESSLADADTLSTSQERRYKQL
KGELITSVKSLSLNNARIETLVEQLYDINKRLVQNEGRLLRLAESYGVKRESFLKEYQGS
ELDTNWTERVATLSGKGWKEFSKNETKAIEDLRAEIQNLAQETAISIGEFRRIVNQVQKG
EREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS
TYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLA
MPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKGAVLPIDAAIQANLRETTTRVL
ASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLR
SFLDS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaaagagaaggaagaggtcgaaaccgaacgcgagggctcagacggccccttg
ctcgacctttccgacgacgcagtcaagaagatgatcaaggccgccaagaagcgcggctat
gtgacgatggacgagctcaacgccgtccttccttccggcgaagtcagttccgaacagatc
gaagacacaatggcgatgctctcggatatgggcatcaatgtggtcgaggaagacgaagtt
gcggaagacaacgattccaatgacagcgaggaaggcggcgagctgaccacgcagtcggga
accgcggttgcgaccacgacgaaaaaagagccgacggatcgcaccgacgatcccgtgcgc
atgtatctgcgcgagatgggctcggtggagcttctttcgcgcgagggcgaaatcgccatc
gcaaagcgtatcgaggccggccgcgagacgatgatcgccgggctctgcgaaagcccgctg
accttccaggcgctgatcatctggcgtgacgaactgaacgaaggcaagattctcctgcgc
gagatcatcgatctcgaggcgacctatgcggggcctgaggccaagcaggcgccggtcgtg
cagcggcccgacgaggagaacaagccggcggccgaggaaaagcacaagcgcacacgcggc
gacgatgtcaccgatgtcggcggcgaggggcagcccgaggaagaggacgacgaagaggat
gaggccaatctgtcgctggccgcgatggaagccgaactcaagcccggcgtgatggaaacg
ctggacttcatcgccgacacctacaagaagctgcgcaagctgcaggatcagaaggtggaa
tcgagcctggcggacgccgacaccctgtcgaccagccaggagcgccgctacaagcagttg
aagggcgaactcatcacctcggtgaagtcgctttcgcttaacaatgcgcgtatcgagacc
ctggtcgagcagctctacgacatcaacaagcgcctggtgcagaacgaaggccgcctgctg
cggcttgccgagagctatggcgtgaagcgcgagtccttcctgaaggaatatcagggctcg
gagctcgacacgaactggaccgagcgcgttgcaacgctttccggcaagggctggaaggag
ttctcgaagaacgagacgaaggcgatcgaggatctgcgtgcggagatccagaatctcgca
caggaaaccgcgatttccatcggcgagttccggcgcatcgtgaaccaggtgcagaagggc
gagcgcgaagccgcaatcgccaagaaagagatggtcgaggccaatctgcgcctcgtgatc
tccatcgccaagaagtacacgaaccgcggccttcaattcctggatctgatccaggagggc
aatatcggcctgatgaaggcggtggacaagttcgagtaccgccgtggctacaagttctcc
acctatgcgacgtggtggatccggcaggcgatcacccgttcgattgccgaccaggcccgt
acgatccgcattccggtccacatgatcgagacgatcaacaagatcgtccgcacctcgcgc
cagatgctgcacgagatcggccgtgagccgaccccggaagagctggccgaaaagctggcc
atgccgctcgagaaggtgcgcaaggtgctcaagatcgccaaggagccgatctcgcttgaa
accccggtgggtgacgaggaagattcgcatctcggcgacttcatcgaggacaagggcgcg
gttctgcccatcgacgcggccattcaggcgaatctgcgcgagacgacgacgcgcgttctt
gcctcgctgaccccgcgcgaagagcgcgtgctgcgcatgcgcttcggcatcggcatgaac
accgaccacacgctggaagaagtcggccagcagttctcggtgacgcgtgagcgtattcgc
cagatcgaggccaaggcgctgcgcaagctcaagcatccgagccgctcgcgcaagctgcgg
tcgttcctcgacagctga
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