Nitratireductor rhodophyticola: T8J41_13560
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Entry
T8J41_13560 CDS
T09622
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nrh
Nitratireductor rhodophyticola
Pathway
nrh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nrh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T8J41_13560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nrh03019
]
T8J41_13560
Enzymes [BR:
nrh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
T8J41_13560
Messenger RNA biogenesis [BR:
nrh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
T8J41_13560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WPZ13187
LinkDB
All DBs
Position
2881561..2882922
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AA seq
453 aa
AA seq
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MTNDNNAKQIGFAELGISGALLKAAEDVGFVTPKPIQEKAIPAMLEKRDVLGIAQTGSGK
TAAFSLPILSQIIALGSKRVRKTARALILCPTRELAVQIDDVVRELSRHAHLATALVLGG
VSRNSQVKRLAQGVDILVATPGRLTDIVRSGELSLAETRWLVLDEADRMLDMGFINDVRR
IARATHPARQTALFSATMPKEVEGLAQSLLNDPLRVEIAKQSTTAGEITQHLVMARTKQK
RKILSDMLADEAMRSVIVFARTKHGADRVTRDLERDGFEAAVIHGNKSQNARQRALNGFR
DGSVRILVATDIAARGIDVPGISHVVNFDLPDQPESYVHRIGRTGRNGASGEAVTLCDPG
ETDKLKAVEKIIRMRLPVTADHTSEPDPVRPVPANNAGERRNAPKPSRGGENRKPKRPAA
KPQQQAEQRQNEGDKPVRRRRRNRNRRPGARAA
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaatgacaacaatgcgaaacagatcggtttcgcagaactgggaatttcaggcgcg
ctgttgaaggcggccgaagacgtggggtttgtgaccccgaagccgatccaggaaaaagcc
attccggccatgctggagaagcgcgacgtgctgggcattgcgcagaccggatcgggcaag
acggcagccttctcgctgcccattctctcgcagatcatcgcgctcggctccaagcgtgtg
cgcaagaccgcgcgcgcgctgatcctgtgtccgacgcgggaactggcggtccagatcgac
gatgtggtgcgtgaactttcgcgccacgcgcatctggccacggcgctggtcctgggcggt
gtctcccgcaacagccaggtgaagcgtcttgcccagggtgtcgacattctggtggcgacg
ccgggccggttgacggacatcgtgcgctcgggcgagctttcgctggccgagacgcgctgg
ctggtgctggacgaggccgaccgcatgctcgacatgggcttcatcaacgatgtgcgccgc
attgcgcgggccacgcatccggcccgccagacggcactcttctcggcaaccatgccgaag
gaagtggaagggcttgcccagagcctgctcaacgatccgttgcgggtggagatcgccaaa
cagtcgaccacggccggtgagatcacacagcatctggtgatggcgcgcaccaagcagaag
cgcaagatcctttccgacatgctggccgacgaggccatgcgctcggtgatcgtgtttgcg
cgcaccaaacatggcgcggaccgggtgacgcgcgacctggaacgcgacgggttcgaggct
gcggtcattcatggcaacaagtcgcagaatgcccgccagcgcgcgctgaacggctttcgc
gatggatcggtgcgcattctcgtggcgaccgatattgcggcgcgcgggatcgacgttcca
ggcatcagccacgtggtgaacttcgatctgccggaccagccggaaagctatgtgcatcgc
attggacgcacgggccgaaacggggcctcgggcgaggcggtgaccctgtgcgatccgggt
gagaccgacaagctgaaggcggtggagaagatcatccgcatgcggctgccggtgacggcg
gaccatacatcggaacccgatccggtgcgtccggtccccgccaacaacgccggcgagcgc
cgcaatgcgccaaaaccctccaggggcggtgaaaaccgcaagccgaagcggcccgcagcg
aaaccgcagcaacaggccgagcagcggcagaatgagggggacaagcctgttcgccgtcgg
cgccggaaccggaacaggcgacccggcgcacgcgctgcataa
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