Nitratireductor rhodophyticola: T8J41_14340
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Entry
T8J41_14340 CDS
T09622
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nrh
Nitratireductor rhodophyticola
Pathway
nrh03410
Base excision repair
nrh03430
Mismatch repair
nrh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nrh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
T8J41_14340 (recJ)
03430 Mismatch repair
T8J41_14340 (recJ)
03440 Homologous recombination
T8J41_14340 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nrh03400
]
T8J41_14340 (recJ)
DNA repair and recombination proteins [BR:
nrh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
T8J41_14340 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
T8J41_14340 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
T8J41_14340 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
QRPTase_C
Motif
Other DBs
NCBI-ProteinID:
WPZ13332
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Position
3012087..3013868
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AA seq
593 aa
AA seq
DB search
MTGDKRYFLDVRSSARGLAWEHRLDLRGENAALAMAQSHGIPEIVARVLAGRGVDMDDAK
RFLDPTIRDLLPDPATLTDMDKAAERLAHAVRRGEKVAIFGDYDVDGAVSSAMMKRFLAH
YGFDAEIYIPDRIFEGYGPNPDAMRDLAGRAALIVTVDCGVNSAAAIAAANEAGADVVVL
DHHQVGGDLPDAVAVVNPNREDDLSGQGFLCAAGVVFLALVQTAKHLRQGGVAKPPPDLL
GLLDLVALGTVCDVVPLVGVNRAFVVKGLLAARQMKTPGLAALARVSRIGEPLNPYHLGF
MIGPRINAGGRIGNAALGSNLLASDDPAEAAKIAETLDRLNTERQDMETVMLAEAKAEAD
AELMAGEGPAVLVTASDRWHPGIVGLLASRLKDHARRPTFAIAFDPNGKGTGSGRSIPGF
DLGKIVREAVAEGLLVKGGGHAMAAGITIERSKLGSLRAFFEERAASAVKKLRDGESLKI
DAALSADGAGFALLDALETAGPYGSGHPTPVLALPRHRLADARIVGNGHIRAELRSQTGA
RMEAIAFRAAETDLGNFLFANRGATIHVAGTLAANHWNGTKRIQMRLQDAASA
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgactggcgataaacgatatttcctcgatgtccggagctccgcgcgcggtctcgcctgg
gagcacaggctcgatctgcggggcgagaacgctgcgctggcgatggcgcagtcgcacggt
attcctgaaatcgtggcgcgtgtactcgccgggcgcggcgtggatatggatgacgcaaag
cgctttctcgatccaaccatccgcgatctcttgcccgatcccgcaacgctgaccgacatg
gacaaggctgccgaaaggctggcccacgcggtgcggcgcggcgagaaggtggcgatcttt
ggcgattatgacgtcgatggggctgtttcctcggccatgatgaagcgctttcttgcgcat
tacggcttcgacgctgaaatctatattcccgaccggattttcgagggctacggccccaat
cccgatgcgatgcgcgatcttgcggggcgggctgctctcatcgtgacggtggattgcggg
gtcaacagcgccgctgccatcgcggccgcgaatgaggcgggcgcggatgtggtggtgctc
gatcatcaccaggtggggggcgatttgccggacgcggtcgctgtcgtgaatcccaaccgc
gaggatgacctttcgggacagggttttctgtgtgctgcgggcgtcgttttcctcgcgctg
gtgcagacggcgaagcatctgcggcaggggggcgttgccaaaccaccaccggacctgctt
gggcttctcgatctcgtggcgctcggcacggtgtgcgatgtggtgccgcttgtgggggtc
aaccgggcttttgtggtgaaagggcttctggccgcgcgccagatgaagacgccggggctt
gccgcactggcgcgcgtgtcgcgcatcggcgaaccgctcaatccctatcatctgggcttc
atgatcggaccgcgcattaacgccggagggcgtatcggcaatgcggctctgggcagcaat
ctgcttgccagcgacgatccggcagaggccgcgaaaatcgcggagacactcgaccggctg
aacaccgagcgtcaggacatggaaacggtgatgcttgcggaggcgaaggccgaagcggat
gccgaattgatggcgggtgaggggcctgccgtgcttgtcaccgcgagcgaccgttggcat
ccgggtattgtcggcctgctcgcttcgcgcctcaaggatcatgcacggcggccgacattt
gcgattgcgttcgatccgaatggcaagggaaccggatcggggcgctccattccgggtttc
gacctgggcaagatcgtgcgtgaagcggtggctgaagggctgctggtgaagggaggcggt
cacgcgatggctgccggaatcacaatcgagcgcagcaagctcgggtcgcttcgcgcgttt
ttcgaggaacgtgcagcgagtgccgtgaagaagctgcgcgacggtgaaagcctgaagatc
gacgcagcactctctgccgatggcgccggttttgcgctgcttgatgcgctggagacggct
gggccctacggttccggccatccaacgccggtgcttgcgctaccgcgccaccggctcgcg
gatgctcgtatcgttggcaatggtcacatccgcgccgagctgcgttcgcagactggcgca
cgcatggaggccattgcctttcgtgctgccgagactgatctcggcaatttcctgttcgcc
aatcgtggcgcgaccattcatgtggccggaacgctggcggccaatcactggaatggaacg
aaacgcatccagatgcgcctgcaggatgcggcaagcgcctga
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