Nitratireductor rhodophyticola: T8J41_15225
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Entry
T8J41_15225 CDS
T09622
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nrh
Nitratireductor rhodophyticola
Pathway
nrh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nrh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
T8J41_15225 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nrh03021
]
T8J41_15225 (rpoC)
03400 DNA repair and recombination proteins [BR:
nrh03400
]
T8J41_15225 (rpoC)
Enzymes [BR:
nrh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
T8J41_15225 (rpoC)
Transcription machinery [BR:
nrh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
T8J41_15225 (rpoC)
DNA repair and recombination proteins [BR:
nrh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
T8J41_15225 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
WPZ13490
LinkDB
All DBs
Position
3207090..3211289
Genome browser
AA seq
1399 aa
AA seq
DB search
MNQEVMNLFNPQAPAQTFDSIRISLASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTALKENQLLSEEEFLIAVDEYGEDQFTA
MIGAEAIHHLLESMDLDTIAGDLRSELASTSSELKQKKLLKRLKVVENFLESGNRPEWMI
MKIVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPASGAPIIVPSQDMVLGLYYLSIMNQNEPGEGMVFADMGELHHALE
NKVVTLHTKIKGRFKTVDAEGNLVSQIHETTPGRMIVGELLPKNHNVPFDICNQELTKKN
ISKMIDTVYRHCGQKETVIFCDRVMQLGFGHACRAGISFGKDDMVIPDTKENLVAETEAL
AKEYEQQYNDGLITQGEKYNKVVDAWAKCSEKVADEMMKRIKAIEFNEDGRQKPMNSVYM
MSHSGARGSPAQMRQLAGMRGLMARPDGSIIETPIISNFKEGLTVMEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVTVPDCGTDKGLTMQPIVDAGQVVASIGQRVLGRTA
LDDIINPATDEVIVSAGRLIDERDVEAIEKAGIQSVRIRSALTCEVRSGVCAICYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHMGGTAQVVDQSFLEASFEGTVKVRNRNV
VRNSEGDLVVMGRNMAVLILDENGEERASHRLTYGSRLFIDEGDKVKRGQRISEWDPYTR
PMLTEVEGTVAFEDLVDGVSVQETADESTGITKREVIDWRSTPRGTDLKPALTVLDAKGK
VAKLARGGDARFLLSVETVLSVEPGSKVKPGDVIARIPTESARTKDITGGLPRVAELFEA
RRPKDHAIIAEIDGTIRFGRDYKNKRRIVIEPHDATLEPAEYLIPKGKPFHLQDGDQIEK
GDFILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKIEI
TAQGDSTYIPGDHVDSVEFEEINERLVEEGKKPAEGQPVLLGITKASLQTPSFISAASFQ
ETTRVLTEAAVAGKIDTLQGLKENVIVGRLIPAGTGGAMSQVRRIARSRDDLILDERRKS
SGAEMADPMIADMTTSAAE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaaccctcaggcgccggcacagactttcgactcg
atcaggatttctctggccagccccgagaagatcctgtcgtggtcgtatggcgagatcaaa
aagcccgagaccatcaactatcgtacgttcaagcccgagcgtgacggtctcttctgcgca
cgcatcttcggtccgatcaaggactatgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgcgagaagtgtggcgttgaagtcacgctgtcgcgggtgcgtcgt
gagcgcatgggccacatcgagctggccgcacccgtcgcgcatatctggtttttgaagtcg
ctgccgtcgcgcatcggcacgctgctcgacatgaccctgaaggacatcgagcgggttctc
tatttcgagaactacatcgtgaccgagccgggcctcactgcgctcaaggaaaatcagctt
ctttccgaagaagagtttctgattgcggtcgacgagtatggcgaagaccagttcaccgcc
atgatcggcgccgaggcgatccatcacctgctggaatcgatggacctcgacacgattgcg
ggtgatctgcgttcggagctggcatccacctcgtcggagctgaagcagaagaagcttctg
aagcgcctcaaggtggtcgagaacttccttgagtcgggcaaccgtcccgagtggatgatc
atgaagatcgtgccggtcatcccgccggacctgcgcccgctggttccgctggatggcggt
cgctttgcgacgtccgatctcaacgacctttaccgccgtgtgatcaaccgcaacaaccgt
ctgaagcgcctcatcgagttgcgcgcaccgggcatcatcatccgcaacgagaagcgcatg
cttcaggaggccgtcgacgcgctgttcgacaatggccgccgcggtcgcgtgatcaccggt
gccaacaagcgtccgctgaagtcgctctccgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtgaccggt
cccgagctcaagctgcaccagtgcggtctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctacgcgcgtctcgacgcgaagggctattcgtccaccgtcaagcaggcaaag
aagctggtcgagaaggaaaagccggaagtctgggatatcctggacgaggttatccgcgag
catccggttttgctgaaccgcgcgccgacgctgcaccgtctgggcatccaggcgttcgag
ccggtgctgatcgaaggcaaggcgatccagcttcacccgctggtctgtaccgcgttcaac
gccgacttcgacggtgaccagatggccgttcacgtgccgctttcgctggaagcccagctc
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcacccggcctccggcgcaccg
atcatcgtgccgtcgcaggacatggttctcggactctactatctgtccatcatgaaccag
aacgagccgggcgagggcatggtctttgccgatatgggcgagctgcaccatgcgctggag
aacaaggtcgtcacgctgcacaccaagatcaagggccgtttcaagacggtcgacgcggaa
ggcaatctcgtttcgcagatccacgagacgacgcctggccgcatgatcgttggcgagctc
ctgccgaagaaccacaatgtgcccttcgacatctgcaaccaggaactgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcactgcggtcagaaagagacggtcatcttc
tgtgaccgcgtcatgcagctcggcttcggccatgcctgccgcgccggcatttccttcggc
aaggacgacatggtcattccggacaccaaggaaaacctggtggccgagaccgaagcgctc
gccaaggaatacgagcagcagtacaatgacggcctgatcacgcagggcgagaagtacaac
aaagtcgtcgacgcctgggccaagtgctcggaaaaggtcgccgacgagatgatgaagcgc
atcaaggcgatcgagtttaacgaagacggtcgtcagaagccgatgaactcggtctacatg
atgtcgcattccggtgcccgtggctcgccggcgcagatgcgtcagcttgccggtatgcgc
ggcctgatggcccgtccggatggctccatcatcgagacgccgatcatctcgaacttcaag
gaaggcctgaccgtgatggagtacttcaactccacccacggtgcccgtaagggtctggcc
gacacggctctgaagacggcaaactcgggttatctgacccgccgtctggttgacgtggct
caggactgcattgtcaccgtgcccgattgcggcaccgacaagggcctgaccatgcagccg
atcgtcgacgccggtcaggtggttgcttccatcggtcagcgtgtgctgggtcgcaccgcg
cttgacgacatcatcaaccccgcaactgacgaggtcatcgtttcggccgggcgtctgatt
gacgagcgcgatgtcgaggccattgaaaaggccggtatccagtctgtccgcatccgttcg
gcgctgacctgtgaagtccgcagcggtgtctgcgcgatctgttacggtcgtgaccttgcg
cgcggtacgccggtcaatatcggcgaggccgttggtgtcatcgccgcccagtcgatcggt
gaaccgggtacccagctcaccatgcgtaccttccacatgggtggtacggcgcaggtggtc
gaccagtcgttcctcgaggcttccttcgaaggcacggtcaaggtccgcaaccgcaatgtg
gtgcgcaattccgaaggcgatctcgtggtgatgggccgcaacatggcggttctgatcctg
gacgagaacggcgaggagcgggcaagccaccgtctcacctatggctcgcgtctgttcatc
gacgagggcgacaaggtgaagcgcggccagcgcatctccgagtgggatccctatacgcgc
ccgatgctgaccgaggtggaaggcaccgtcgcgttcgaggatctggtcgacggtgtgtcg
gttcaggaaacggccgacgaatccaccggtatcaccaagcgtgaggtcatcgactggcgg
tcgacgccgcgcggaaccgacctgaagccggcgctgacggtgctcgatgccaagggcaag
gtggcaaagctcgcccgtggtggtgatgcgcgcttcctgctgtcggtggagacggttctt
tccgtggagccgggctccaaggtcaagccgggcgacgtgattgcccgtatcccgaccgag
agtgcccgcaccaaggacatcactggtggtctgccgcgcgttgcggaactgttcgaggcc
cgtcgtccgaaagatcacgccatcatcgccgagatcgatggcacgatccgcttcggtcgg
gactacaagaacaagcgccgcatcgtcatcgagccgcatgacgcgactctggagcccgcg
gaatacctcattcccaagggcaagccgttccatcttcaggacggtgatcagatcgagaag
ggcgactttattctcgacggcaacccggcgccgcacgacatcctggcgatcaagggcgtg
gaggctctggcttcctacctggtcaacgaaatccaggaggtctaccggctgcagggcgtg
ttgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaagatcgagatc
acggcacagggcgactcgacctacattccgggcgaccatgtcgactcggtcgagttcgag
gagatcaacgagcgtctggtggaagagggcaagaagccggccgaaggccagccggtcctc
ctcggcatcaccaaggcttcgctgcagacaccgtccttcatctccgcggcctccttccag
gagaccacacgcgtgctgactgaggcggctgtcgccggcaagatcgacacgctgcagggc
ttgaaggagaacgtcattgtcggccgtctcatcccggccggtacgggtggcgccatgagc
caggttcgccggatcgcgcgctcgcgcgacgatctgatcctggacgagcggcgcaagagc
tcgggcgccgagatggccgatccgatgatcgccgacatgacgacaagcgctgccgaataa
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