Nitratireductor rhodophyticola: T8J41_16460
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Entry
T8J41_16460 CDS
T09622
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
nrh
Nitratireductor rhodophyticola
Brite
KEGG Orthology (KO) [BR:
nrh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nrh03032
]
T8J41_16460 (topA)
03400 DNA repair and recombination proteins [BR:
nrh03400
]
T8J41_16460 (topA)
Enzymes [BR:
nrh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
T8J41_16460 (topA)
DNA replication proteins [BR:
nrh03032
]
Prokaryotic type
DNA Topoisomerases
T8J41_16460 (topA)
DNA repair and recombination proteins [BR:
nrh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
T8J41_16460 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WPZ13719
LinkDB
All DBs
Position
3446983..3449604
Genome browser
AA seq
873 aa
AA seq
DB search
MDLVIVESPAKAKTINKYLGSNYKVLASFGHVRDLPPKDGSVRPDEDFAMSWSVDSPSSK
RLSDIAKAVKDADTLILATDPDREGEAISWHVLEVLKQKKVLKDKPVQRVVFNAITKKAV
LDALSHPREVDAPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR
EAEIERFIREDYWQIAATLATPRQESFEARLTTVDGKKLQKLDIKSQEQADDIKAMLEGA
SFRAVSVEAKPTRRNPAPPFTTSTLQQAASSRLGFGASRTMQVAQRLYEGIDIGGETAGL
ITYMRTDGVQMAPEALDQARKAIGAEFGERYLPEKPRFYSVKAKNAQEAHEAIRPTDFSR
TPDQVRRYLDADQARLYEMIWKRAIASQMQPAEIERTTVEIVAENGARNAGLRAVGSVIR
FEGFLAAYAIDKDENAEDEESRRLPEIHEGETQTREKIDATKHTTEPPPRYSEASLIKKM
EELGIGRPSTYAATLKTLEDRDYVTIEKRRLMPQAKGRLVTAFLENFFERYVEYDFTADL
EEKLDKISDGQLSWKEVLRDFWQDFSGHVDEIKELRVTNVLDALNEELAPLAFPAKEDGS
DPRACPRCGTGQLSLKLGRHGAFVGCSNYPECGFTRQFGEAGNGENGENGLDGDKVLGKD
PHTEEEITLRSGRFGPYVQRGEGKEAKRAGLPKGWAPDSIDIEKALALLSLPRDVGQHPE
SGKMISAGIGRYGPFLLHDGAYANLESVEDVFSIGLNRAVTVIAEKQAKGGRGRSTPTAL
KELGDHPDEGGKITVRDGRYGPYVNHGKINATLPKGKDPMDVTLEEALELIAAKAAKGGK
KKPAAKKKAPAKKTTTAKKTTAAKKKTAAKKEE
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggatctcgttatcgtcgagtcgccggccaaggcgaaaaccatcaacaaatatctgggc
tcgaactacaaggttctggcttcgttcgggcatgtgcgcgaccttccgcccaaggatggc
tctgtgcgtcccgacgaggatttcgccatgtcgtggagcgtggacagcccgtcctccaag
cggctgagcgacattgccaaggctgtgaaggatgccgacacgctgatccttgccaccgac
cccgaccgcgagggtgaggcgatttcctggcatgtgctggaagtgctgaagcagaaaaag
gtgctgaaggacaagccggtccagcgcgttgttttcaacgccatcaccaaaaaggccgtg
ctcgatgcgctctctcatccgcgtgaggtggatgcgccgctggtggatgcctatcttgcg
cgccgtgcgctcgactatctggtcggcttcacgctctcgcccgtcctgtggcgcaaactg
ccgggagcgcgctcggccggccgtgtgcagtcggtggcgctgcggcttgtctgcgaccgc
gaggcggagatcgaacggtttatccgcgaggattactggcagattgccgccacgctcgcc
acgccgcgccaggaaagttttgaggcgcggctgacgacagtcgacggaaagaagctgcag
aagctcgacatcaagagccaggagcaggccgacgatataaaggcgatgcttgagggcgcc
tcgttcagggcggtctccgtcgaggcgaagccgacgcggcgcaatcccgccccgcccttc
accacctccaccctgcagcaggccgcctcctcgcgcctcggtttcggtgcgtcgcgcacc
atgcaggtggcgcagcgcctttatgagggcatcgacattggcggcgagacagccggtctc
ataacctatatgcgtaccgacggcgttcagatggcgcccgaggcgctcgatcaggcccgc
aaggcgatcggcgcggaattcggcgagcgctatttgcccgagaagccccgcttttattcg
gtaaaggccaagaatgcgcaggaagcgcatgaggcgatccgtccgacggatttctcccgt
acgcccgatcaggtgcgccgctatctcgatgccgatcaggcccgtctctacgaaatgatc
tggaagcgcgccatcgccagccagatgcagccggccgagatcgagcgcaccacggtcgag
atcgtggccgagaatggcgcccgcaatgccggcctgcgtgcggttgggtcggtgatccgg
ttcgagggtttccttgccgcctacgcgatcgacaaggacgaaaacgccgaggacgaggaa
agccgccgcctgcccgaaatccacgaaggcgagacgcagacgcgcgaaaagatcgacgcc
accaaacacacgaccgagccgccgccgcgctactcggaagcctctctcattaagaagatg
gaagagctgggcatcggccgcccctccacctatgcggcgacgctcaagacgcttgaggat
cgtgactatgtgacgatcgaaaagcgcaggctcatgccccaggccaagggccggctcgtg
accgcattcctcgaaaacttcttcgagcgctatgtggaatacgatttcacggctgacctt
gaggagaagctcgacaagatttccgacggccagctttcctggaaggaggtgctgcgcgac
ttctggcaggatttctccggccatgtggacgagatcaaggagctgcgcgtcaccaatgtt
ctcgatgcgctgaacgaggaacttgcgccgctcgcattccccgccaaggaagatggcagc
gatccgcgcgcctgcccgcgctgcggcaccggtcagctctccctgaaactcggtcgtcac
ggcgcgtttgtcggctgctccaactatcccgaatgcgggtttacccgccagttcggcgag
gccggcaatggcgagaatggcgaaaacggcctcgacggcgacaaggtgctcggcaaggac
ccgcacaccgaagaagagatcacgctgcgctccggccgtttcggcccctatgtgcagcgg
ggtgaaggcaaggaagccaagcgcgccggcctaccgaagggctgggcgcctgattccatc
gacatcgaaaaggcattggcgctgctctccctcccccgcgatgtcggccagcatcccgaa
tccggaaagatgatttcggccggtatcgggcgctatggtcccttccttctccatgacggc
gcctacgccaatctcgagagcgtcgaggacgtgttctccatcggtctcaaccgcgctgtc
acggtgattgcggaaaaacaggccaagggcgggcgcggacgttccacgccgacggccctc
aaggagcttggcgatcatccggacgagggcggcaagatcaccgtccgcgacgggcgctat
ggcccctatgtgaatcacggcaagatcaacgccacccttcccaaggggaaggacccaatg
gatgtcacccttgaggaagccttggagctgattgccgccaaggcggccaagggcggcaag
aagaagccggcggcgaaaaagaaggctcccgcgaagaagacgacaacggcgaaaaagacc
accgcggcgaagaagaaaaccgcagccaaaaaagaggaataa
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