Nocardioides renjunii: SHK17_00530
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Entry
SHK17_00530 CDS
T10238
Name
(GenBank) DNA-formamidopyrimidine glycosylase family protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
nrn Nocardioides renjunii
Pathway
nrn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SHK17_00530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nrn03400
]
SHK17_00530
Enzymes [BR:
nrn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SHK17_00530
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SHK17_00530
DNA repair and recombination proteins [BR:
nrn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SHK17_00530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Zn_ribbon_8
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
WQQ22482
LinkDB
All DBs
Position
complement(129588..130469)
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AA seq
293 aa
AA seq
DB search
MPELPEVEALVQDLRGRLVGRAISRVDLAAFSALKTFDPPLHALHGTLVDDVTRHGKFLD
VDASGVHLVIHLARAGWIRWRDEVPALPARPNSKNPLAARVVIDDPDLDVQPGLDITEAG
TRKGLAIYVVRDPQEVEGISRLGPDPLDDAFTIDVLRGILEAEGRKQIKGVLRMQSIVAG
IGNAYSDEILHAARMSPFKPANSLEDDDLQTLYGAIRGTLGDAVRRASGLAASELKGEKK
SNLAVHGRTGQKCPVCGDVVREVSFADSSLQYCPTCQTGGKPLADRRLSKLLK
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagctgcccgaggtcgaagccctcgtccaggacctgcgcggccgcctcgtcggg
cgggcgatcagccgcgtcgacctggccgcgttcagcgccctcaagaccttcgacccgccc
ctccacgccctccacggcacgctcgtggacgacgtcacccgccacggcaagttcctcgac
gtcgacgccagcggcgtgcacctggtgatccacctcgcccgcgccgggtggatccgctgg
cgcgacgaggtccccgcactgccggcgcggcccaacagcaagaacccgctcgccgcgcgc
gtcgtcatcgacgaccccgacctcgacgtccagcccggcctcgacatcaccgaggccggc
acccgcaagggcctcgcgatctacgtcgtccgcgacccgcaggaggtcgagggcatctcc
cgcctcgggcccgacccgctcgacgacgccttcaccatcgacgtgctgcggggcatcctc
gaggcggagggccgcaagcagatcaagggcgtgctgcggatgcagtccatcgtggccggg
atcggcaacgcctactccgacgagatcctgcacgcggcccggatgtcgccgttcaagccg
gccaacagcctcgaggacgacgacctccagaccttgtacggcgccatccgcggcacgttg
ggcgacgccgtccgccgtgccagcgggctcgcggcgagcgagctcaagggcgagaagaag
tcgaacctcgcggtccacggccggacgggccagaagtgcccggtgtgcggcgacgtggtg
cgcgaggtgtccttcgccgactcgagcctgcagtactgcccgacgtgccagaccggcggc
aagccgctcgcggaccgccggctgtccaagctgctcaagtag
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