Nocardioides renjunii: SHK17_01015
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Entry
SHK17_01015 CDS
T10238
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
nrn Nocardioides renjunii
Pathway
nrn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SHK17_01015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nrn03400
]
SHK17_01015
Enzymes [BR:
nrn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SHK17_01015
DNA repair and recombination proteins [BR:
nrn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SHK17_01015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_30
AAA_22
PDDEXK_1
PhoH
ResIII
Motif
Other DBs
NCBI-ProteinID:
WQQ22575
LinkDB
All DBs
Position
complement(228706..232056)
Genome browser
AA seq
1116 aa
AA seq
DB search
MPIDTFDIAAELRPGTTLLEASAGTGKTWAIAALVTKHIASGQVRLDEMLVVTFTRAASQ
ELRERVRRQLDEAVQLLTDPSTRHPDNRLHDWLLDASAGEVGARLERLTSALVSFDAATI
ATIHQFCQLVLRSLGVAGDTDAAATLVEDLEELTTEAVDDLYLARFGAEADPPWSRADAL
ELARSVTSDPRARVEPAAVLTDAPDSTAAMRVRFACDVLEEVERRKRRLGILSYDDLLSQ
LADALEDTSAAARRRMRHRWKFVLIDEFQDTDPVQWQVFQRAFSETTTMVLIGDPKQAIY
AFRGGDVVTYLQAAETATTTQTLGVNWRSDRPLLRSVHAVLQGAQLGDERIVVHPVEAHL
DESRLQGAGAPFRLRVVRRAELGKGPRSRPPVAVWRDHVVTDTAHDIKRLLESGPTFEGR
PLEPGDVAVLAPRRNELEAVQHALALVGVPSVVNAGGSVFHTPAAGEWLTLLEALEQPHR
ADRVRAAALTSFFGHTAQSLDAGGDDLTDELTARVRTLADVFTHRGVAAVVEVAAVDGLT
ARVLARVGGERTLTDLRHVGESLLRVSTEERLGLVGLLAWLREQVADDKLEVASERTRRL
DSDADAVQLVTIHGSKGLQYPVVYLPTLWNRYTGRDPAIPLFHDDEGRRCRDVGGPSAFH
REAVGRHWREDAGESLRLLYVAMTRAQSQVVAWYAAADRNTPDSPLHRMLFGRRPGMAPV
PDSQALVDEDRLLAILAAWQDAGGPSVELAALTPPDPTPLERSTEALSVRSFARSVDTSW
RRTSYSSLSAASAAHAAAASLSEPELVPDEDSDTTLDDVTADLGGLVVEGSDADAASVPS
PMADLPVGATFGSLVHAVLEHADPAADDFRAELLRLVEEQLVWWPVELDPGGLADALVAV
CSSPLGPLAGDRTLLSLGLPDRLRELDFEVPLAGGDTVAAPADVRLGDLAPLLRRHLPDG
DAVRVYADALDGDPDLAAQSLRGYLTGSIDVVLRLDVDGAQRFLTVDYKTNWLGPIDQPL
TAHDYRPAMLDEAMAHSDYPLQALLYTVVLHRYLRWRLPGYAPATHLGGVLYLYLRGMCG
PETPVVDGMPCGVFSWRPPVPLVEELSDLLDGVVRR
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgccgatcgacaccttcgacatcgccgccgagctccggccgggcaccacgctcctcgag
gccagcgccggcaccggcaagacctgggccatcgccgccctcgtcaccaagcacatcgcc
tcggggcaggtgcgcctcgacgagatgctcgtggtcaccttcacccgggccgccagccag
gagctgcgtgagcgcgtacgccgacagctcgacgaggccgtccagctcctcaccgacccg
tccacccgccaccccgacaaccggctccacgactggctgctcgacgcctccgccggcgag
gtcggcgcgcgcctcgaacggctgacctcggcactggtgtccttcgacgccgcgaccatc
gcgaccatccaccagttctgccagctcgtgctgcgcagcctcggcgtcgccggcgacacc
gacgcggcggcgacgttggtcgaggacctcgaggagctgaccacggaggcggtcgacgac
ctctacctcgcgcgcttcggcgcggaggccgacccgccgtggagccgcgccgacgccctg
gagctcgcccggtccgtcaccagcgacccgcgggcgcgcgtcgagccggcggcggtgctc
accgacgctcccgactcgaccgccgcgatgcgcgtgcggttcgcgtgcgacgtgctcgag
gaggtcgagcggcgcaagcgacgcctcgggatcctcagctacgacgacctgctcagccag
ctcgccgacgccctcgaggacacctccgccgctgcgcgccgacgcatgcggcaccggtgg
aagttcgtgctgatcgacgagttccaggacaccgacccggtccagtggcaggtcttccag
cgcgcgttctccgagacgaccaccatggtgctcatcggcgaccccaagcaggcgatctac
gcgttccgcggtggtgacgtcgtcacctacctccaggcggccgagaccgccacgacgacc
cagacgctcggggtcaactggcgctccgaccgccccctcctgcggtccgtccacgccgtc
ctgcagggcgcgcagctcggtgacgagcgcatcgtggtgcacccggtggaggcccacctc
gacgagtcccgcctccagggggcgggcgctccgttccggctgcgggtcgtgcgccgggcc
gagctcggcaagggaccccgctcccgaccaccggtcgccgtgtggcgcgaccacgtggtc
accgacaccgcccacgacatcaagcgcctcctcgagtcgggacccaccttcgagggccga
ccgctcgagcccggcgacgtggcggtgctggcgcctcggcgcaacgagctcgaggcggtg
cagcacgccctggcgctcgtcggcgtcccgtcggtggtcaacgcgggcggctcggtgttc
cacacgcccgcggcgggtgagtggctgacgctgctggaggcgctcgagcagccgcaccgc
gccgaccgggtgcgcgccgcggcactgacgtcgttcttcgggcacaccgcgcagtccctc
gacgcgggcggcgacgacctgaccgacgagctcaccgcgcgcgtccgcacgctcgccgac
gtcttcacgcaccgcggcgtggccgccgtggtcgaggtcgccgccgtcgacggcctcacc
gcccgggtgctcgcccgcgtcggtggcgagcgcacgctgaccgacctgcgccacgtcggc
gagtcgctgctgcgagtgtccaccgaggagcggctcggcctcgtcgggctgctcgcctgg
ctgcgcgagcaggtggccgacgacaagctcgaggtggcctccgagcgcacccgccgcctc
gactccgacgccgacgcggtccagctcgtcaccatccacggcagcaagggcctccagtac
cccgtcgtctacctgccgacgctgtggaaccgctacaccggccgcgaccccgccatcccg
ctcttccacgacgacgagggccggcgctgccgcgacgtcggcggcccgagcgcgttccac
cgggaggcggtggggcgccactggcgcgaggacgccggcgagtcgctccgcctgctctac
gtcgccatgacacgggcgcagtcgcaggtggtggcctggtacgccgccgcggaccgcaac
acccccgactcgccgctgcaccggatgctcttcgggcgtcgccccggcatggcgcccgtg
cccgacagccaggccctcgtcgacgaggaccggttgctcgcgatcctcgcggcgtggcag
gacgccggcgggcccagcgtcgagctcgcggccctcacgccaccggaccccacgccgctc
gagcgctccaccgaggcgctgtcggtgcggtcgttcgcccgatcggtcgacacgtcgtgg
cgccgcacctcctactcctcgctgtcggcggccagcgccgcccacgccgcggcggcgtcg
ctgtccgagcccgagctggtgcccgacgaggactccgacaccaccctcgacgacgtgacc
gccgacctgggcggcctggtcgtcgaaggcagcgacgcggacgccgcctcggtgccgtcg
ccgatggcggacctgccggtcggcgcgaccttcgggtcgctggtccacgcggtgctcgag
cacgccgacccagccgcggacgacttccgcgccgagctgctgcggctggtcgaggagcag
ctggtctggtggccggtcgagctcgacccgggcgggctggccgacgcgctggtcgcggtg
tgcagcagcccgctcgggccgctcgcgggcgaccggaccctcctgtcgctgggcctgccc
gaccggctgcgcgagctcgacttcgaggtgccgctggccggtggcgacacggtggccgcg
cccgccgacgtacgcctcggcgacctcgcaccgctgctgcgccgacacctgcccgacggc
gacgccgtgcgggtctacgccgacgccctcgacggcgaccccgacctcgccgcccagtcg
ctgcgcggctacctcaccggctcgatcgacgtcgtgctgcgcctcgacgtggacggcgcc
cagcgcttcctcaccgtcgactacaagaccaactggctggggccgatcgaccagccgctg
acggcgcacgactaccgccccgcgatgctcgacgaggcgatggcccactccgactacccc
ctccaggcactgctctacaccgtcgtgctccaccgctacctgcggtggcggctgcccggc
tacgccccggccacccacctcggcggcgtgctctacctctacctccggggcatgtgcggc
ccggagaccccggtggtcgacgggatgccgtgcggcgtgttctcgtggcggccgcccgtc
ccgctggtcgaggagctgtccgacctgctcgacggggtcgtgcgccgatga
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