Nocardioides renjunii: SHK17_02190
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Entry
SHK17_02190 CDS
T10238
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
nrn Nocardioides renjunii
Brite
KEGG Orthology (KO) [BR:
nrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nrn03021
]
SHK17_02190
Transcription machinery [BR:
nrn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SHK17_02190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r4_2
Crp
KORA
HTH_Crp_2
DUF7343
HTH_IclR
MarR_2
HTH_3
HTH_23
HTH_24
Motif
Other DBs
NCBI-ProteinID:
WQQ22797
LinkDB
All DBs
Position
474846..475718
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AA seq
290 aa
AA seq
DB search
MVTTSIVPVSSTPATTTLSSVPSPVRRSFRAPDGPERARRTDDIVSGLRSAGPDSGPDSE
HHELTRQLIETNIAVARSMAARYRNRGIDLDDLEQVALLGLTKAAQRFDPSAGHDFLSFA
VPTVRGELRRHFRDSGWMIRPPRRVQDMQARVASAHEELEAQLGRSPRPTEVAAHLGEQL
DDVVEALAADGCFTPTSLDATVGDGTSSLGDLIGHEDRAMRSAEARIVLEPVIRRLSARD
RRIVRMRFYDERTQQEIADAVGLTQAQVSRVLTRILADLRADLGESRPAA
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
gtggtcaccacctcgatcgttcctgtcagctccacccccgcgacgaccaccctgtcgtcc
gtcccctcgcccgtccgccggtccttccgtgcccctgacggtccggagcgagcgcggcgc
accgacgacatcgtctccggcctccggtccgcggggcccgactcgggtccggactccgag
caccacgagctgacccgtcagctcatcgagaccaacatcgccgtcgcccgctcgatggcc
gcccgctaccgcaaccgcggcatcgacctcgacgacctcgagcaggtggcactcctcggc
ctcaccaaggccgcgcagcgattcgatccctccgccgggcacgacttcctgtcgttcgcg
gtccccacggtgcgcggcgagctccgccggcacttccgcgactcgggctggatgatccgg
ccgccgcgccgcgtgcaggacatgcaggcgcgggtcgcgtcggcccatgaggagctcgag
gcccagctcggccgctcgccccgtccgacggaggtcgcggcgcacctcggcgagcagctc
gacgacgtggtcgaggccctcgccgcggacgggtgcttcacgccgacctcgctcgacgcc
accgtcggtgacggcacgtcgagcctgggcgacctgatcggccacgaggaccgcgcgatg
cggtcggccgaggcccgcatcgtgctggagccggtcatccggcggctctccgcacgcgac
cggcgcatcgtccggatgcgcttctacgacgagcgcacccagcaggagatcgccgacgcc
gtcggtctcacgcaggcgcaggtctcgcgggtgctcacccgcatcctggccgacctccgg
gccgacctgggcgagtcccgccccgccgcctga
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