Nocardioides renjunii: SHK17_03355
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Entry
SHK17_03355 CDS
T10238
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nrn Nocardioides renjunii
Pathway
nrn03020
RNA polymerase
Brite
Enzymes [BR:
nrn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SHK17_03355
Transcription machinery [BR:
nrn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SHK17_03355
DNA repair and recombination proteins [BR:
nrn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SHK17_03355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WQQ23014
LinkDB
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Position
724248..728093
Genome browser
AA seq
1281 aa
AA seq
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MLDVNFFDQLQIGLATADDIRTWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEDARHRDSESLENKVGLERERLEKRRDASIEDRAKKLEED
LATLEAEGAKADAKRKVRDGADREMNQLRDRANREIARLEEVWDTFKNLKVQDLLGDELL
YREMKTWFGKYFEGHMGATAIQKRLQDFDIEAEVESLRDTIANGKGQRKVRALKRLKVVD
AFRKTGNQPIGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVSGPQLKLHQCGLPKQMALELFKPFVMKRLVDLSHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQIHPLVCGAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSTNNILKPSDGRPVTMPSQDMIIGLFWLTAEREGEVGEGR
IFSSPAEAIMAYDRAEIGLQSKIKIRLNDIVPPLDLELGADWEERTAILLETTLGRVYFN
DTLPADYPFVNEEVGKKRLGSIVNDLAERYTKVQVAASLDALKDAGFHWATRSGVTVSID
DVTTPDSKAEILGRYEAQAEKVQKNYERGVMTDDERRQELIELWTQAAAEVGRAMETNFD
RTNPIYMMVDSGASGNMNQIRQVAAMRGLVANPKGEIIPRPIKANFREGLSVLEYFISTH
GARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTERGLPKRIDDEHVETSAYARS
AAVEITHPETGEVLAAAGEDLGDVKIGELVSAGITEVKVRSVLTCDARTGTCAKCYGRSL
ATGQLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRVVELFEARSPK
GRTPISESAGRVKIEESDKARVVVVTPDDGSEVQEIPVSKRSRLNVEDGDHIEVGHHITS
GTPDPQDVLRILGVRKAQEHLVDEVQEVYRSQGVSIHDKHIEIIIRQMLRRVTVIESGDT
NLLPSDLVDRVRFEEENRRVVSEGGKPASGRPVLMGITKASLATESWLSAASFQETTRVL
TDAAINGRSDSLRGLKENVIIGKLIPAGTGLERYRNIRVEPTEEARAAAYSVTGYDSYDY
DFGPSSQAVALDDFDFGSYQN
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtgaacttcttcgaccagcttcagatcggcctggccacggcggacgacatc
cgcacgtggagccacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
ccggagcgtgacggcctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgttccaaggtgcgtcgtgagcgcatgggccacatcgagctcgccgccccc
gtgacccacatctggtacttcaagggcgtgccgtcgcgcctgggctacctgctcgacctg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatgatcacctcggtcgac
gaggacgcgcgccaccgcgactccgagtccctcgagaacaaggtcgggctcgagcgcgag
cgcctcgagaagcgtcgcgacgcctccatcgaggaccgcgccaagaagcttgaggaggac
ctcgccaccctcgaggccgagggcgccaaggccgacgccaagcgcaaggtgcgcgacggt
gccgaccgtgagatgaaccagctccgtgaccgcgccaaccgcgagatcgcgcgcctcgag
gaggtctgggacaccttcaagaacctcaaggtccaggacctgctcggcgacgagctgctc
taccgcgagatgaagacctggttcggcaagtacttcgagggccacatgggcgccacggcg
atccagaagcgcctccaggacttcgacatcgaggccgaggtggagtcgctgcgcgacacc
atcgccaacggcaagggccagcgcaaggtccgcgccctcaagcgcctcaaggtcgtcgac
gccttccgcaagaccggcaaccagcccatcggcatggtgctcgacgccgtcccggtgatc
ccgccggacctgcgtccgatggtccagctcgacggtggccgcttcgccacctccgacctg
aacgacctctaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgctcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacagc
ctcttcgacaacggccgtcgtggccgccccgtcaccggtccgggcaaccgtccgctgaag
tcgctctccgacatgctcaagggcaagcagggtcgcttccggcagaacctgctcggcaag
cgcgtcgactactccggtcgttcggtcatcgtctcgggcccgcagctcaagctccaccag
tgcggcctgcccaagcagatggcgctcgagctcttcaagccgttcgtgatgaagcgcctc
gtcgacctctcgcacgcgcagaacatcaagtccgccaagcggatggtcgagcgcgcgcgc
ccggtcgtgtgggacgtcctcgaagaggtcatcaccgagcaccccgtgctgctcaaccgc
gcgcccaccctgcaccgcctcggcatccaggccttcgagccgcagctgatcgagggcaag
gccatccagatccacccgctcgtgtgcggcgcgttcaatgccgacttcgacggcgaccag
atggccgtgcacctcccgctgtccgcggaggcgcaggccgaggcccggatcctgatgctg
tcgaccaacaacatcctcaagccctcggacggccgtccggtgaccatgccctcgcaggac
atgatcatcggcctcttctggctgaccgcggagcgcgagggcgaggtcggcgagggccgc
atcttctcgtccccggccgaggcgatcatggcctacgaccgcgccgagatcgggctgcag
agcaagatcaagatccgcctcaacgacatcgtgcccccgctcgacctcgagctgggtgcc
gactgggaggagcggaccgcgatcctgctcgagacgaccctgggtcgcgtctacttcaac
gacacgctcccggcggactacccgttcgtcaacgaggaggtcggcaagaagcgcctcggc
tcgatcgtcaacgacctcgccgagcgctacaccaaggtgcaggtcgccgcgtcgctcgac
gccctcaaggacgccggcttccactgggccacgcgctcgggcgtgacggtctcgatcgac
gacgtcaccaccccggacagcaaggccgagatcctgggccgctacgaggcgcaggccgag
aaggtccagaagaactacgagcgcggtgtgatgaccgacgacgagcgtcgtcaggagctc
atcgagctgtggacccaggctgctgccgaggtcggtcgcgcgatggagaccaacttcgac
cgcaccaacccgatctacatgatggtcgactcgggtgcctccggaaacatgaaccagatc
cggcaggtcgcggccatgcgtggtctggtggccaacccgaagggcgagatcatcccgcgc
ccgatcaaggccaacttccgtgagggcctgtcggtgctcgagtacttcatctcgacccac
ggtgcccgcaagggcctggccgacaccgcgctgcgcaccgccgactcgggctacctgacc
cgtcgtctggtggacgtgtcgcaggacgtcatcatccgtgaggacgactgcggcaccgag
cgcggcctgcccaagcggatcgacgacgagcacgtggagacctcggcctacgcccgctcc
gccgccgtcgagatcacccacccggagacgggtgaggtgctcgccgccgccggcgaggac
ctgggtgacgtcaagatcggtgagctcgtgtccgcgggcatcaccgaggtgaaggtccgc
tcggtcctcacctgcgacgcccgcaccggcacgtgtgccaagtgctacggccgctcgctg
gccaccggccagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatc
ggtgagcccggcacgcagctgaccatgcgcaccttccacaccggtggcgtcgcctccgcg
gacgacatcacgcagggtctgccccgtgtggtcgagctcttcgaggcccgctcgcccaag
ggccggaccccgatctcggagtccgccggtcgcgtgaagatcgaggagagcgacaaggcc
cgcgtcgtcgtggtcacccccgacgacggctccgaggtccaggagatcccggtctccaag
cgctcgcgcctcaacgtcgaggacggcgaccacatcgaggtgggtcaccacatcacctcc
ggcacccccgacccgcaggacgtcctgcgcatcctcggtgtccgcaaggcgcaggagcac
ctcgtggacgaggtccaggaggtctaccgctcgcagggtgtgtcgatccacgacaagcac
atcgagatcatcatccggcagatgctgcgccgggtgacggtgatcgagtccggtgacacc
aacctgctcccgtcggacctggtcgaccgggtgcggttcgaggaggagaaccgtcgcgtg
gtctccgagggcggcaagccggcctcgggtcgcccggtcctcatgggcatcaccaaggcc
tcgctcgcgacggagtcgtggctctcggcggcctccttccaggagaccacccgggtcctc
accgacgccgcgatcaacggccgctccgacagcctccgcggcctgaaggagaacgtgatc
atcggaaagctcatcccggccggcaccggcctcgagcgctaccgcaacatccgggtggag
cccaccgaggaggcgcgtgccgcggcctactcggtcacgggctacgactcctacgactac
gacttcggtccgtcgtcgcaggccgtcgcgctcgacgacttcgacttcgggtcgtaccag
aactga
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