Nocardioides renjunii: SHK17_04060
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Entry
SHK17_04060 CDS
T10238
Name
(GenBank) fibronectin type III domain-containing protein
Organism
nrn Nocardioides renjunii
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_9
fn3
Cadherin_4
Cadherin_5
SUKH-4
Big_7
Ig_J_second
Motif
Other DBs
NCBI-ProteinID:
WQQ23153
LinkDB
All DBs
Position
858081..864347
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AA seq
2088 aa
AA seq
DB search
MARATFVRRHRAGIASGLALSVAAGAVVAYAVTASGYKAHEAELNDGGVWVVNGKKGWSG
RLNKPVNQLDGVVPNPDGKARLDVVQDGAAVVTLNTDAARGQALETSRLELQDGGAAAVP
TLGDVQMAGGTLASVDAETGAIWAVRYDDQLGKPVVSAVDRQADPLAEVGEQAALAVSTT
GTVVATSAVDGTVTTLAPDDTVLGEPVTRDLPRAAGQVSSVTTVGERVVTLDEDAGVLRV
LDGAEATVPPGSVLQQPGPAYDAVLVAAADGLLSVDLDTGETTTVSTQSGEPVEPVRLGA
CVFGAWSGGVGALAVQCGAQEVNERSLGGDATSLAFRVNRGEIVLNDADSGAVWDVEQEK
PARIDNWDAFTSKKQKDDDDDQNDNETDADRRPPRAKPDSYGVRAGRTTVLHPLDNDSAP
EGRLLSIVDVVQPSGGARVEISPDGQTLVLQMPEEARPATFDYVIDDGRNGLSASATVDV
EVRGQEENEPPDLREGYRKPTYRVPHGGALSVPVLADWRDDRDGDTLLLDSAVAVDGAQN
GAAARTTSDGRIRFTAPTTAASGPQLVRVDFAVTDGSTPVRKSLSFQVQAPKDQKAFAPS
AEPDVVRGEVGKPIKIRPLLNDLPGSDPNTPDAELALGGKVPQQPNARIVSDLDGGQLTF
TGERAGTYFLSYDAAYGNAPLDQGTVRVDVKPKPKRAAEPVAMPDTLTVFGQAPGIVDVL
ANDLDPAGGLLVVQRAAADREGQLDVAIIDGRWLRISAVQPALSPRTQTISYTISNGASS
GVRGEVVVTQRPQPADNTPITAADKVVVRAGGAVAAPVLDNDVSPAGDRLTLLNDLVDSE
TPGQLEVVPPIDVTGDVGRAFVSGRVVRYVAPEQVEERDTYTVTYVAQNLEGKRAQGVLS
VTVVPADDPNDPPEPPTLEGRVVAGDAIKVRVPGVGVDRNGDPVTVTGITSAPRLGRIVS
YGGNFLEYQAYPRTVGTDEFTYSLVDSQGAFATGTVRIAVVEVGQPQPPLAVADRLTVEP
GRTATFDPLANDFIAAGDSVEVELVDAPAGVELDPRTNLVSVPAPGELTAPPVVVVYRVT
NGLQESRATMTLQTAEGFNNPPIVYDAFGRADDSGSVVVDVLEGAYDPDGPAKGLEVTDV
SGDDSARVVDGVEVRANRGAAPKVLPFEVRDADGAVAVASVYIPPTGNGLPYVVDDALIE
LEPGATTTGKLSDYVAAPGDAEVRLASGRRSWSASPTSLAVGPDGDNRFTLSAPAAFRGP
GAVLVEVTSATDASGNEDTSTTDDGATVLLSIPVQVGDDKPELTCPSTVVPISAGQDYAL
DIATFCKVFTLDPRDAAGLSYTADWSQPLDGLAVGSPEGSVVSVTAAETATEGGQAALTV
QAGDSNTQLVRFQLAQAPSPRLLPIRVETMEAGQSRSYDVGSYLEAGVSDPDPTIVSVQS
TGNPGVRASADGGRLTLTATDDARGARASFRLVVSDVSSDDPPASRTAEGRIEFQVVGTP
EAPGEPRPFPRTDQIGAVEMSWAPPRDDGGAPILHYLVREEKTGATQRCDTNVCVFRKLK
NGGNYSFRVQAVNRVGKSDWSGLSKTARADTAPGRVENIRMVDRGDGYITIAWDKPTTNT
SRILDYTITWPGGPVGVVAGDNPRYTATGLDNNTQYAFTVKAQNVVDYSAPRTSVEMQPL
GTPPAPAAPAVADLESGANQTSVRIAWQAVLPEGPGPTSYTVSYSNGTSSGTVPGCQKLV
ALSCTHAGIPYDGTTYTYRVVAANEPGKRSQPSEGTAIQAVGRPAPWGSFDVFATGASQE
AEVRYTVPDSRGNVSKVEVLVNGGVVKQFGQQTGSFTTRIPTPGNEQPYPVQLRVCNERA
PTGCTLSGVQNVQTYGRLEGMLSDISDPVVNGKTVTWTVTGSSNGDPAELAYWIDGAQQP
TIQLGGVGAFSQSISTTTADFGQETRLEVRLRDSSPGGRGETYQDDRARSGVPQPGVSVE
KLSACRDDNDSPDDNCWQGNGSGKPPPCEVESCGFIRFNVNGFYEGFTCRVSMTWNGYTG
WRTYSFGANGQNTNTQDTDWYAPSGGGATVTCQGNGFWQRTSSGSQTW
NT seq
6267 nt
NT seq
+upstream
nt +downstream
nt
gtggcacgtgcgacgttcgtgcgtcgacaccgggcgggcatcgcctcgggcctcgcgctg
agcgtcgctgccggagccgtcgtcgcctacgccgtcaccgccagcggctacaaggcccac
gaggccgagctcaacgacggcggcgtgtgggtcgtcaacggcaagaagggctggtccggc
cggctcaacaagcccgtcaaccagctcgacggcgtcgtgcccaaccccgacggcaaggcc
cgcctcgacgtcgtccaggacggcgcggccgtcgtcacgctcaacaccgacgccgcccgc
ggccaggcgctggagaccagtcgcctcgagctgcaggacggcggcgcggccgcggtcccc
acgctcggtgacgtgcagatggccggcggcaccctcgccagcgtcgacgccgagaccggt
gcgatctgggcggtccgctacgacgaccagctcggcaagcccgtggtgagcgccgtcgac
cggcaggccgacccgctcgccgaggtcggcgagcaggccgccctggcggtcagcaccacc
ggcaccgtcgtggccacgtcggccgtcgacggcacggtgaccacgctcgcccccgacgac
accgtcctcggcgagcccgtgacgcgcgacctcccgcgtgccgccggccaggtctcgtcg
gtgaccacggtcggcgagcgcgtggtcaccctcgacgaggacgccggggtgctgcgggtc
ctcgacggcgccgaggccacggtcccgcccggcagcgtcctccagcagcccggacccgcc
tacgacgccgtgctggtcgcggcggccgacgggctgctcagcgtcgacctcgacacgggg
gagacgacgaccgtgtccacccagtccggcgagccggtcgagccggtccggctcggcgcg
tgcgtcttcggggcctggtcgggaggggtcggcgcgctcgcggtgcagtgcggcgcccag
gaggtcaacgagaggtccctcggtggcgacgcgacgagcctggcgttccgggtcaaccgc
ggcgagatcgtcctcaacgacgccgacagcggggcggtgtgggacgtcgagcaggagaag
ccggcccgcatcgacaactgggacgccttcacgtcgaagaagcagaaggacgacgacgac
gaccagaacgacaacgagaccgacgccgaccggcgaccgccccgcgccaagcccgactcc
tacggcgtgcgcgccggtcgcaccacggtcctgcacccgctcgacaacgactccgcgccc
gagggccggctgctgagcatcgtcgacgtcgtccagccctccggcggcgcccgcgtggag
atcagcccggacgggcagaccctcgtgctgcagatgccggaggaggcgcgccccgcgacg
ttcgactacgtcatcgacgacggccgcaacggcctgtcggccagcgccacggtcgacgtg
gaggtccgcggccaggaggagaacgagccgccggacctgcgcgagggctaccgcaagccg
acctaccgcgtgccccacggcggcgcgctgtcggtcccggtcctggccgactggcgcgac
gaccgtgacggcgacaccctgctcctggactccgccgtcgcggtcgacggagcgcagaac
ggcgctgctgcgcgcaccacctcggacggccggatccgattcaccgcgccgaccaccgcc
gcgtccggcccgcagctggtccgggtcgacttcgccgtcaccgacggctcgacgccggtg
cggaagtcgctgagcttccaggtgcaggcccccaaggaccagaaggcgttcgccccgagc
gccgagcccgacgtcgtacgcggtgaggtcggcaagccgatcaagatccgccccctgctc
aacgacctgcccggctcggaccccaacacgcccgacgccgagctcgcgctcgggggcaag
gtgccccagcagcccaacgccaggatcgtctccgacctcgacgggggacagctcaccttc
accggggagcgcgccggcacctacttcctcagctacgacgcggcctacggcaacgccccg
ctcgaccagggcacggttcgcgtggacgtgaagcccaagcccaagcgtgccgccgagccg
gtggcgatgcccgacacgctgaccgtcttcggccaggcgcccgggatcgtcgacgtgctg
gccaacgacctcgacccggcgggtggcctgctggtggtccagcgtgccgccgcggaccgc
gaggggcagctcgacgtcgcgatcatcgacggtcggtggctgcggatctccgccgtgcag
ccggcgctgtcgccccgcacgcagaccatctcctacacgatcagcaacggggccagctcc
ggcgtccgcggcgaggtcgtcgtcacccagcgcccccagcccgcggacaacaccccgatc
acggcggccgacaaggtggtcgtgcgcgcaggcggcgccgtggccgccccggtcctcgac
aacgacgtgtccccggccggcgaccgcctgacgctgctcaacgacctggtcgacagcgag
acgcccggccagctcgaggtcgtccccccgatcgacgtcacgggtgacgtgggccgcgcg
ttcgtctcgggtcgcgtggtgcgctacgtcgcccccgagcaggtcgaggagcgcgacacc
tacaccgtcacctacgtcgcgcagaacctcgagggaaagcgagcccagggggtcctctcg
gtgaccgtcgtgccggccgacgaccccaacgacccgcccgagccgccgaccctggagggt
cgcgtggtcgccggcgacgcgatcaaggtccgcgtcccgggcgtcggcgtcgaccgcaac
ggcgacccggtcaccgtcaccggcatcacctcggcgccccggctgggccggatcgtctcc
tacggcggcaacttcctcgagtaccaggcctacccccgcacggtcggcaccgacgagttc
acctactccctcgtcgactcgcagggcgccttcgccaccggcaccgtccgcatcgcggtc
gtcgaggtgggccagccccagccgccgctggcggtcgcggaccggctcacggtcgagccc
ggaaggacggcgaccttcgacccgctggccaacgacttcatcgccgccggcgactcggtg
gaggtcgagctggtcgacgccccggcgggcgtcgagctggacccccggaccaacctggtg
tcggtgcccgcccccggggagctcacggccccgccggtggtggtcgtctaccgcgtgacc
aacggcctccaggagtcccgcgccacgatgaccctgcagacggccgagggcttcaacaac
cccccgatcgtctacgacgccttcggccgcgccgacgacagcggcagcgtcgtggtcgac
gtcctcgagggcgcctacgaccccgacgggcccgccaagggcctcgaggtgaccgacgtg
agcggcgacgactcggcgcgtgtcgtcgacggcgtcgaggtccgcgccaaccgcggggcg
gcgcccaaggtgctgccgttcgaggtccgtgacgccgacggcgccgtggccgtcgcatcc
gtctacatcccgcccaccggcaacggcctgccctacgtggtcgacgacgccctgatcgag
ctcgagcccggtgccaccacgacgggcaagctctccgactacgtcgcggcacccggggac
gccgaggtgcgcctggcgtcgggtcggcgctcgtggtccgcctcgccgacgtccctcgcg
gtcggtcccgacggcgacaaccgcttcaccctgtcggcccccgccgcgttccgcggaccg
ggtgccgtgctcgtggaggtcacctcggcgaccgacgccagcgggaacgaggacacctcc
accaccgacgacggtgcgacggtcctgctctccatcccggtccaggtgggtgacgacaag
ccggagctcacgtgcccctccacggtcgtccccatctcggccgggcaggactacgccctc
gacatcgccacgttctgcaaggtcttcaccctcgacccccgggacgcggccgggctctcc
tacaccgccgactggagccagcccctcgacgggctcgctgtcggcagccccgagggctcc
gtcgtgtcggtgaccgccgcggagaccgcgaccgagggcggccaggcggccctcacggtg
caggcgggggacagcaacacccagctggtgcgcttccagctggcccaggcgccgtccccg
aggctgctgcccatccgggtcgagacgatggaggccgggcagagccgcagctacgacgtc
ggctcttacctcgaggccggcgtgtccgacccggaccccacgatcgtctccgtgcagagc
accggcaaccccggtgtccgtgcgtcggccgacggcggcaggctgacgctgacggcgacc
gacgacgcccgcggcgcccgtgccagcttccggctggtggtcagcgacgtctcgtccgac
gacccgcccgcctcgcggaccgccgaggggcgcatcgagttccaggtcgtcgggaccccc
gaggcgcccggcgagccgcgtccgttcccgcgcaccgaccagatcggcgccgtggagatg
tcgtgggcgccgccgcgcgacgacggcggcgcgccgatcctgcactacctggtgcgcgag
gagaagaccggcgccacgcagcggtgcgacaccaacgtctgcgtcttccgcaagctcaag
aacggcggcaactacagcttccgcgtgcaggccgtgaaccgcgtcggcaagagcgactgg
agcggtctctcgaagacggcccgggccgacacggcgccggggcgcgtcgagaacatccgg
atggtcgaccggggcgacggctacatcaccatcgcctgggacaagccgaccaccaacacc
tcgcggatcctcgactacaccatcacgtggcccggtggcccggtcggcgtcgtcgccggg
gacaacccccgctacaccgccaccggcctcgacaacaacacccagtacgcgttcacggtc
aaggcccagaacgtcgtcgactactccgcgccccgcacgtcggtcgagatgcagccgctc
ggcacgcctccggcgccggcggcgccggccgtcgccgacctcgagtcgggtgccaaccag
acctccgtccgcatcgcgtggcaggccgtgctccccgaggggccgggacccacctcctac
accgtcagctactccaacggcacgtcgtccggcacggtgcccggctgccagaagctggtg
gcgctgtcctgcacccacgccggcatcccctatgacggcaccacctacacctaccgggtg
gtggccgccaacgagccgggcaagcgctcccagccgagcgagggcaccgcgatccaggcc
gtgggccggcccgcgccgtggggcagcttcgacgtgttcgcgaccggcgccagccaggag
gccgaggtccgctacacggtccccgactcgcgcggcaacgtcagcaaggtcgaggtcctc
gtcaatggcggggtcgtcaagcagttcgggcagcagaccggctccttcaccacccggatc
ccgacgcccggcaacgagcagccctaccccgtccagctccgggtgtgcaacgagcgcgcg
cccacgggctgcacgctcagcggcgtgcagaacgtgcagacctacggccgcctcgagggg
atgctcagcgacatcagcgaccccgtggtcaacggcaagaccgtgacctggacggtgacc
ggttccagcaacggcgacccggccgagctggcctactggatcgacggcgcccagcagccg
acgatccagctcggcggggtcggtgccttcagccagtcgatctcgaccacgacggccgac
ttcggccaggagacccggctcgaggtgcgcctgcgcgactcctcgcccggagggcgcggc
gagacctaccaggacgaccgcgcccggagcggcgtgccgcagccgggtgtcagcgtggag
aagctctcggcctgccgcgacgacaacgacagccccgacgacaactgctggcagggcaac
ggctcgggcaagccgccgccgtgcgaggtcgagtcctgcgggttcatccggttcaacgtc
aacggcttctacgagggcttcacctgccgggtgagcatgacctggaacggctacaccggc
tggcgcacctactccttcggcgccaacgggcagaacaccaacacccaggacaccgactgg
tacgcccccagcggcggcggagcgaccgtcacctgccagggcaacggcttctggcagcgc
acgtcgagcggctcccagacctggtag
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