Nocardioides renjunii: SHK17_06710
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Entry
SHK17_06710 CDS
T10238
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
nrn Nocardioides renjunii
Pathway
nrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHK17_06710 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nrn03021
]
SHK17_06710 (rho)
03019 Messenger RNA biogenesis [BR:
nrn03019
]
SHK17_06710 (rho)
Transcription machinery [BR:
nrn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SHK17_06710 (rho)
Messenger RNA biogenesis [BR:
nrn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SHK17_06710 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Motif
Other DBs
NCBI-ProteinID:
WQQ23672
LinkDB
All DBs
Position
1400457..1402400
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AA seq
647 aa
AA seq
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MTETASAAPETAEAGKPAKKAASKSAPRSGSRSAGLGSMLLADLKSMAAGLGIPGAGSMK
KAQLVDAIRSAQGGGTQPKAEQAPAGQPRGEQATAEQPSSASAPAAEDPAPQTTVRTRTR
KQRQAEQAEQRADRPADQPTDQPTDQDAEQSDQSAPRQRDRQQDKQQDKQQDKQPDRQQE
KARQDKTDRQDRQDRQSRQDRQDRQDRQEQGGNEQQVQQQGQRQGKQSQQQAQQQHAQQQ
QAQQAQQQQSQQLDDDDDGEGGSRRNRRRRGRDRTPARAGGRNEPDTTILEDDVLVPAAG
ILDVLDNCAFVRTSGYLPGPEDVYLSLSMVRKYHLRRGDAVVGQVRQPREGERREKFNPM
VRIDSVNGTEADGAKERAEFSDAVPVHPHQRLRLATDDANPTGRVIDIAAPVGKGQRGLI
LAPPRTGATSLLQSIAQSVTTNNPECHVMVVLVDTRPEEVTDFQRAVKGEVIASTFDRQP
ADHTLVAELAIERAKRLVELGHDVVVLLDSLTRLGRAYNLAAPANGRILGGVVDASAVHP
TKEFFGAARKIEDGGSLTILAAVSVGTGSAIDEFFLEELTGTANLELVLSAERAARGILP
AVDVTASGTRHEEKLLAPAEGAVVGDLRKQLAAADSAPAVAKVFGSR
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgagactgcctctgccgcccccgagaccgctgaggcgggcaagcccgccaagaag
gcggcctcgaagtcggccccccggtcgggctcgaggtcggccggcctcggctcgatgctg
ctcgccgacctgaagtcgatggccgccggcctcggcatccccggtgccggctcgatgaag
aaggcgcagctcgtcgacgcgatcaggtcagcccagggcggcggcacccagccgaaggcc
gagcaggcccccgccgggcagccgcgaggtgagcaggccactgccgagcagccgagcagc
gcgtcggcgcccgccgcggaggaccccgctccccagacgacggtccgcacccggacccgc
aagcagcgccaggccgagcaggccgagcagcgtgccgaccggcccgccgaccagccgacc
gaccagcccacagaccaggacgccgagcagtccgaccagtccgctccccgccagcgggac
cggcagcaggacaagcagcaggacaagcagcaggacaagcagccggaccggcagcaggag
aaggcccggcaggacaagacggaccgccaggaccgtcaggaccgccagtcgcgccaggac
cgccaggaccgccaggaccgccaggagcagggcggcaacgagcagcaggtccagcagcag
ggccagcgacagggcaagcagagccagcagcaggcccagcagcagcacgcccagcagcag
caggcccagcaggcccagcagcagcagagccagcagctcgacgacgacgacgacggcgag
ggcggcagccgccgcaaccgccgccgccgcggtcgcgaccgtacgcccgcccgcgcgggt
gggcgcaacgagccggacaccacgatcctcgaggacgacgtgctggtgccggcggccggc
atcctcgacgtgctcgacaactgcgccttcgtgcgcacctcgggctacctgcccggcccg
gaggacgtctacctgtcgctgtcgatggtgcggaagtaccacctgcgccgcggcgacgcc
gtcgtcggccaggtgcgccagccccgcgagggcgagcgccgcgagaagttcaacccgatg
gtgcgcatcgacagcgtcaacggcaccgaggccgacggggccaaggagcgcgccgagttc
tccgacgcggtcccggtccacccgcaccagcgcctgcgactcgcgaccgacgacgccaac
cccaccgggcgggtcatcgacatcgccgctcccgtgggcaagggccagcgcgggctgatc
ctcgccccgccgcgcacgggtgccacctcgctgctgcagtcgatcgcccagtcggtgacg
acgaacaaccccgagtgccacgtgatggtggtgctggtcgacacgcgccccgaggaggtc
accgacttccagcgcgccgtgaagggcgaggtcatcgcctcgacgttcgaccgccagccg
gccgaccacaccctggtcgccgagctcgccatcgagcgcgccaagcgcctcgtcgagctg
ggccacgacgtcgtcgtgctgctcgactcgctcacccggctgggccgggcctacaacctc
gccgcgccagccaacggccgcatcctcggtggcgtcgtggacgcctcggcggtgcacccg
accaaggagttcttcggcgccgcccgcaagatcgaggacggcggctcgctgaccatcctt
gccgcggtctccgtgggcaccgggtcggccatcgacgagttcttcctcgaggagctcacc
ggcaccgccaacctcgagctggtgctcagcgccgagcgggcggcgcgggggatcctgccg
gccgtggacgtcacggcctcgggcacccggcacgaggagaagctgctcgcccccgcggag
ggcgcggtcgtcggtgacctgcgcaagcagctggccgccgccgactcggctcccgccgtc
gcgaaggtcttcggctcccgctga
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