Nocardioides renjunii: SHK17_09335
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Entry
SHK17_09335 CDS
T10238
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
nrn Nocardioides renjunii
Pathway
nrn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nrn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SHK17_09335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nrn03021
]
SHK17_09335
Transcription machinery [BR:
nrn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SHK17_09335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
WQQ24172
LinkDB
All DBs
Position
1956690..1958201
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AA seq
503 aa
AA seq
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MFVSSHARKLLPAEVLTHPSIAALVAGATSTGTVSPEDVRRASDEAGVEPRHLKALLVHL
SGLGISVQIDAASSRAVAATSKRAATSAAAKKAPAKKAPATKAAAATTAEAPAKKAAAKK
TAAKKAADTPVDPAADVVDLGAAAPVVIGPDGKKLLPDIPDEVFEKDVAKDPTIKEDEKQ
AFTVSAADETDEPEQQVMVAGATADPVKDYLKQIGKVPLLNAEMEVELAKRIEAGLFSEE
KLAKGGRISPKMLEEYEWIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGN
LGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQ
MLQDLGREPTPEELAKELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAI
VPADAVSFTLLQEQLHAVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQ
IESKTMSKLRHPSRSQVLRDYLD
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgtgtcctcacacgcacgcaagttgctccccgcggaggtgctcacgcacccctcc
atcgccgctctggtcgccggcgccacatcgaccggcaccgtgtcccccgaggacgtgcga
cgtgccagtgacgaggccggtgtcgagccccggcacctgaaggccctgctggtgcacctc
agcggtctgggcatctccgtccagatcgacgccgccagctcgcgcgcggtcgctgcgacc
agcaagcgtgccgcgacgtccgcggcggcgaagaaggccccggccaagaaggcgcccgcg
accaaggcggccgccgcgacgaccgccgaggcccccgccaagaaggccgcggcgaagaag
accgccgccaagaaggccgccgacaccccggtcgaccccgcggccgacgtcgtcgacctc
ggtgccgcggctcccgtggtgatcggcccggacggcaagaagctgctgccggacatcccc
gacgaggtgttcgagaaggacgtcgccaaggacccgacgatcaaggaggacgagaagcag
gccttcaccgtctccgcggccgacgagaccgacgagcccgagcagcaggtcatggtggcc
ggcgccaccgccgacccggtgaaggactacctcaagcagatcggcaaggtcccgctcctc
aacgccgagatggaggtcgagctcgccaagcgcatcgaggccggcctgttctccgaggag
aagctcgccaagggcggccggatcagcccgaagatgctcgaggagtacgagtggatcgcc
gaggacggtcggcgcgccaagaaccacctcctcgaggccaacctgcgactcgtggtctcg
ctcgccaagcgctacaccggccgcgggatgctgttcctggacctcatccaggagggcaac
ctcggtctgatccgcgcggtggagaagttcgactacaccaagggctacaagttctcgacc
tacgcgacctggtggatccgccaggcgatcacccgcgccatggccgaccaggcccgcacc
atccgcatcccggtgcacatggtcgaggtcatcaacaagctcgcccgcgtccagcggcag
atgctccaggacctgggccgcgagcccacgccggaggagctggccaaggagctcgacatg
acccccgagaaggtcatcgaggtccagaagtacggccgcgagcccatctcgctgcacacg
cccctcggtgaggacggcgactccgagttcggtgacctcatcgaggactccgaggcgatc
gtcccggcggacgcggtctcgttcaccctgctgcaggagcagctgcacgcggtgctcgac
accctgtccgagcgcgaggccggcgtggtctcgatgcggttcggcctcaccgacggccag
cccaagaccctcgacgagatcggcaaggtctacggcgtgacgcgcgagcgcatccgccag
atcgagtccaagacgatgtcgaagctgcggcaccccagccgctcgcaggtcctgcgcgac
tacctggactga
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