Nocardioides renjunii: SHK17_10050
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Entry
SHK17_10050 CDS
T10238
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
nrn Nocardioides renjunii
Brite
KEGG Orthology (KO) [BR:
nrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nrn03019
]
SHK17_10050
Enzymes [BR:
nrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SHK17_10050
Messenger RNA biogenesis [BR:
nrn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SHK17_10050
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
SH3_HelY
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
AAA_22
nSTAND_NTPase5
Pox_A_type_inc
Motif
Other DBs
NCBI-ProteinID:
WQQ24313
LinkDB
All DBs
Position
2109935..2112742
Genome browser
AA seq
935 aa
AA seq
DB search
MTEDQDQDLTPAERYAAFQREKAYPMLKDFAGLYGFELDDFQVRACQEIENGRGVLVAAP
TGSGKTIVGEFAIHLALQTGRKAFYTTPIKALSNQKYHDLVKRYGADNVGLLTGDNVING
EAPVVVMTTEVLRNMLYAGSRTLLGLGYVVMDEVHYLADRMRGAVWEEVIIHLPESVTLV
SLSATVSNAEEFGEWLATVRGETSTILEEKRPVPLFQHVMVGRRLLDLFASSDVDASAGF
VKEGAPVNEELTRIARDDWASSRLMRDRRSPRKGKPGSTKNPRAVGNGRRVWIPSRVEVV
ERLDREGLLPAIMFVFSRAGCDAAVTQLVQANTRLTTAAERDEIFARVEEASRTLPEEDL
HVLGYHEFLDGLTRGIAAHHAGLLPAFKQVVEELFQDGLVKVVFATETLALGINMPARTV
VIEKLSKWNGESHADLTPGEYTQLTGRAGRRGLDIEGHGVVLYQPGMNPGEVAGLASTRT
YPLRSSFRPSYNMAVNLVHQFGRARSRELLEQSFAQFQADKAVVGLARQVHKAEEALEGY
REAATCHLGDFMEYAALRRRISDLEKGAARERRLDRRQEAMASLGKLRPGDVINVPAGKF
SGLAVVIDPGHSGDEPRPYVVTADRQARRLAPMDFPVPVEAIGRLRIPKSFNGRNPAMRR
DLATALRTQARGFDGPEPRRQKQRDSFSDTPADREVGRLRADLKSHPCHQCPDREDHSRW
AERYFKLERDTETLKRRVENRTNTVARTFDRVCDVLTALGYLDGDTVTEQGAHLRRIYTD
MDLVAAEAIREGLFDDLAPSELASVLSALVFEARRADDASSPKMPGGQVRPVLGELVRVW
GRLDALERDHRLDFLREPDIGFAWAAWRWAEGDDLDDVLMATGLSAGDFVRWMKQLLDLC
GQVADAAGDRPLRTTARTAAKQLKRGVIAYSVLAE
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaggaccaggaccaggacctgacgccggcggagcgctacgcggcgttccagcgg
gagaaggcgtaccccatgctcaaggacttcgccggcctctacggcttcgagctcgacgac
ttccaggtgcgcgcctgccaggagatcgagaacggccggggcgtgctcgtcgccgcgccg
acgggctcgggcaagacgatcgtcggcgagttcgcgatccacctcgcgctccagacgggg
cgcaaggcgttctacaccacgccgatcaaggcgctgtcgaaccagaagtaccacgacctg
gtcaagcgctacggcgccgacaacgtcggcctgctcaccggcgacaacgtcatcaacggc
gaggcgccggtggtcgtgatgaccaccgaggtgctccgcaacatgctctacgccgggtcc
cgcaccctgctcggcctcggctacgtggtcatggacgaggtccactacctcgccgaccgg
atgcgcggcgccgtgtgggaggaggtgatcatccaccttcccgagtcggtgacgctggtg
tcgctgtcggcgaccgtgtccaatgccgaggagttcggcgagtggctggccacggtccgc
ggcgagacgagcaccatcctcgaggagaagcggcccgtgccgctgttccagcacgtgatg
gtgggccggcggctgctcgacctcttcgcctcctccgacgtcgacgcgagcgccggcttc
gtcaaggagggcgctcccgtcaacgaggagctcacccggatcgcgcgcgacgactgggcc
agctcgcgcctcatgcgcgaccggcgctcgccgcgcaagggcaagcccggctcgacgaag
aacccccgcgccgtcggcaacggccgccgggtgtggatcccgagccgggtcgaggtcgtc
gagcggctcgaccgcgagggcctcctgcccgccatcatgttcgtcttcagccgggccggg
tgcgacgcggccgtgacccagctcgtgcaggccaacacccggctcacgaccgccgcggag
cgcgacgagatcttcgcccgggtggaggaggcctcgcggaccctgccggaggaggacctg
cacgtcctcggctaccacgagttcctcgacgggctgacccgcgggatcgccgcccaccac
gccggcctgctgccggcgttcaagcaggtggtggaggagctgttccaggacgggctggtg
aaggtggtcttcgccacggagacgctggccctgggcatcaacatgcccgcacgcaccgtc
gtcatcgagaagctctcgaagtggaacggtgagtcgcacgccgacctgacgccgggggag
tacacccagctcaccgggcgggcgggacgacgcggcctcgacatcgagggccacggcgtc
gtgctctaccagccgggcatgaacccgggggaggtcgcggggctcgcgtccacccggacg
taccccctccgctcgtccttccggccgtcctacaacatggcggtcaacctcgtgcaccag
ttcggccgggcgcgctcgcgcgagctgctcgagcagtcgttcgcgcagttccaggccgac
aaggccgtcgtcgggctggcgcggcaggtgcacaaggcggaggaggccctcgagggctac
cgcgaggcggcgacctgccacctcggcgacttcatggagtacgccgccctgcgccgccgc
atcagcgacctggagaagggtgccgcgcgggagcgccgcctggaccgccggcaggaggcg
atggcgtcgctgggcaagctgcgtcccggcgacgtgatcaacgtccccgccggcaagttc
agcggcctggccgtcgtcatcgaccccggccactccggcgacgagccacggccctacgtc
gtcaccgccgaccggcaggcccggcggctggccccgatggacttcccggtgccggtggag
gcgatcggccggctgcggatccccaagtcgttcaacgggcgcaacccggccatgcgccgc
gacctggccacggcgctgcgcacgcaggcgcgcggcttcgacggccccgagccgcgccgc
cagaagcagcgcgactccttcagcgacacccccgccgaccgggaggtcggccggctccgg
gcggacctgaagtcgcacccgtgccaccagtgccccgaccgcgaggaccactcccggtgg
gccgagcgctacttcaagctggagcgcgacaccgagaccctcaagcggcgggtggagaac
cgcaccaacaccgtcgcgcggaccttcgaccgggtgtgcgacgtgctgacggcgctgggc
tacctcgacggcgacaccgtgaccgagcagggcgcacacctgcggcggatctacaccgac
atggacctcgtggcggcggaggcgatccgggagggcctcttcgacgacctggccccctcc
gagctcgcctccgtcctgtcggcgctcgtcttcgaggcccggcgcgccgacgacgcgtcg
tcgccgaagatgccgggcggccaggtgcgacccgtgctgggcgagctggtccgcgtgtgg
ggcaggctcgacgccctcgagcgcgaccaccgcctcgacttcctgcgcgagcccgacatc
ggcttcgcctgggcggcgtggcgctgggccgagggcgacgacctcgacgacgtcctcatg
gccaccgggctgtccgccggtgacttcgtgcggtggatgaagcagctgctcgacctgtgc
gggcaggtggccgacgccgcgggtgaccgtccgctgcgcaccaccgcgcgcacggcggcc
aagcagctcaagcggggcgtgatcgcctactcggtgctcgccgagtag
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