Nocardioides renjunii: SHK17_13635
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Entry
SHK17_13635 CDS
T10238
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
nrn Nocardioides renjunii
Pathway
nrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHK17_13635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nrn03019
]
SHK17_13635
03016 Transfer RNA biogenesis [BR:
nrn03016
]
SHK17_13635
Enzymes [BR:
nrn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SHK17_13635
Messenger RNA biogenesis [BR:
nrn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SHK17_13635
Transfer RNA biogenesis [BR:
nrn03016
]
Prokaryotic type
tRNA degradation factors
SHK17_13635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_KhpA-B
PCB_OB
S1_RRP5
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
WQQ20942
LinkDB
All DBs
Position
complement(2854567..2856819)
Genome browser
AA seq
750 aa
AA seq
DB search
MSEPIISAVETVLDNGSFGKRTVKFETGLLARQAAGSVTAYLDDETMLLSATTAGKTPKD
HFDFFPLTIDVEERMYAVGQIPGSFFRSEGRPGEDAILTCRLIDRPLRPTFKKGLRNEVQ
VVITVMALDPDMPYDVLAINAASLSTQLSGLPFSGPVGGVRVALIEGQWVAFPTHSQLES
AVFDMVVAGRVTESGDVAIMMVEAEAPEATLDLVQNGAQAPTEEIVAGGLDAAKPFIKQL
VEAQAQLAAEAAKPVQDFPVFLDYEDDVYAAVESAAKDDTAAAMTIGDKQERELKVDEIK
GELLEQLSGQFEGREKEIGAAFRSLTKSLVRQRVLRDKVRIDGRGLADIRPLHAEVDVIP
RVHGSALFERGETQILGVTTLDMLKMEQQLDTLSPEKHRRYMHKYVFPPFSTGETGRVGS
PKRREVGHGALARRALLPVLPSREEFPYAIRQLSEAMGSNGSTSMGSVCASTLSLLQAGV
PLKASVAGIAMGLISDEVDGETQYVALTDILGAEDAFGDMDFKVAGTREFVTALQLDTKL
DGIPAEVLAAALTQARDARLAILDVMAEAIDAPEEMSVHAPRIITIRVPVDKIGEVIGPK
GKVINQIQDDTGATLSIEDDGTVYIGATNGEAAEAAKAAVNAIANPTMPEVGERYLGTVV
KTTNFGAFVSLMPGKDGLLHISKLRALAGGKRVEAVEDVLSVGQKVQVSIAEIDDRGKLS
LVPVVDEAEGGSEDEADAGSDVSPEATDAE
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaacccatcatctccgctgtcgagaccgtcctcgacaacggttccttcggcaag
cgcacggtcaagttcgagaccggcctgctcgcccgccaggccgccggctcggtcacggcc
tacctcgacgacgagaccatgctgctctcggcgacgaccgcgggcaagacgcccaaggac
cacttcgacttcttcccgctcacgatcgacgtcgaggagcggatgtacgccgtgggccag
atccccggctccttcttccgctccgagggccgcccgggcgaggacgcgatcctcacctgc
cgcctcatcgaccgcccgctgcgcccgacgttcaagaagggcctgcgcaacgaggtccag
gtcgtcatcaccgtcatggcgctcgaccccgacatgccctacgacgtgctcgcgatcaac
gccgcgtcgctctccacccagctctccggcctgccgttctccggccccgtcggcggcgtg
cgcgtcgccctcatcgagggccagtgggtggccttcccgacccactcgcagctcgagtcg
gccgtcttcgacatggtcgtcgccggtcgggtcaccgagtccggcgacgtcgcgatcatg
atggtcgaggccgaggcccccgaggccacgctcgacctcgtgcagaacggcgcccaggcg
ccgaccgaggagatcgtggccggtggcctcgacgccgccaagcccttcatcaagcagctc
gtcgaggcgcaggcccagctcgcggccgaggccgccaagccggtccaggacttcccggtc
ttcctcgactacgaggacgacgtctacgccgcggtcgagtccgccgcgaaggacgacacg
gccgccgcgatgaccatcggcgacaagcaggagcgcgagctcaaggtcgacgagatcaag
ggcgagctcctcgagcagctctccggccagttcgagggccgcgagaaggagatcggcgcg
gcgttccgctcgctgaccaagagcctggtccgccagcgcgtgctgcgcgacaaggtccgc
atcgacggccgcggcctcgccgacatccgtccgctgcacgccgaggtcgacgtgatcccg
cgcgtccacggctccgcgctgttcgagcgtggcgagacccagatcctgggcgtcaccacc
ctcgacatgctcaagatggagcagcagctcgacacgctctccccggagaagcaccgccgc
tacatgcacaagtacgtcttcccgccgttctccaccggcgagaccggccgcgtgggctcg
cccaagcgtcgcgaggtcggccacggcgccctcgcgcgccgcgccctcctgccggtgctg
ccctcgcgtgaggagttcccctacgcgatccgccagctctccgaggccatgggctccaac
ggctcgacctcgatgggctcggtctgcgcctcgaccctgtcgctgctgcaggccggtgtg
cccctcaaggcctccgtcgccggcatcgcgatgggcctcatctccgacgaggtcgacggc
gagacgcagtacgtcgcgctgaccgacatcctcggtgccgaggacgccttcggcgacatg
gacttcaaggtcgccggcacccgcgagttcgtgaccgcgctgcagctcgacaccaagctc
gacggcatcccggccgaggtcctggccgccgccctgacccaggcccgcgacgcgcgcctg
gcgatcctcgacgtgatggccgaggccatcgacgcgccggaggagatgtcggtccacgcc
ccgcgcatcatcaccatccgggtgcccgtcgacaagatcggcgaggtgatcgggcccaag
ggcaaggtcatcaaccagatccaggacgacacgggcgcgacgctgtccatcgaggacgac
ggcacggtctacatcggtgcgaccaacggcgaggcggccgaggccgccaaggccgcggtc
aacgcgatcgccaacccgaccatgcccgaggtcggcgagcgctacctcggcaccgtggtg
aagaccaccaacttcggtgccttcgtctcgctcatgccgggcaaggacggcctgctgcac
atcagcaagctgcgtgcgctcgccggtggcaagcgtgtcgaggccgtcgaggacgtcctg
tccgtcggccagaaggtccaggtctccatcgccgagatcgacgaccgcggcaagctctcg
ctggtccccgtcgtcgacgaggccgagggcggctccgaggacgaggccgacgccggctcc
gacgtcagccccgaggcgaccgacgccgagtga
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