Nocardioides renjunii: SHK17_15680
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Entry
SHK17_15680 CDS
T10238
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nrn Nocardioides renjunii
Pathway
nrn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SHK17_15680 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nrn03400
]
SHK17_15680 (ligD)
Enzymes [BR:
nrn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SHK17_15680 (ligD)
DNA repair and recombination proteins [BR:
nrn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SHK17_15680 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
WQQ21328
LinkDB
All DBs
Position
complement(3282857..3283771)
Genome browser
AA seq
304 aa
AA seq
DB search
MSPAAGEVQVDVEGRTLTISNLDKVLYPRTGTTKGEVLNYYAQVSPVLLPHLVDRAVTRI
RWPHGVQGSSFFEKNAPAGTPSWVRTHEVPTTGSRSGKGEGTIRFPICDDLATLTWLANL
AALELHVHQWTVDDDGRPRDPDRLVIDLDPGEPAGLHECAQVALMVRDALAERDLGCTPV
TSGSKGLHLYAPMPGGKDSLDSDGTTALAKEVAEELQKEHPDLVTSVMTKAKRPGKVFLD
WSQNSGSKTTISPYSLRGRERPTAATPLTWDEVEEGAEDELALEQFSMEQVLERVTDLGD
VFEA
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgagccccgccgccggagaggtgcaggtcgacgtcgagggccggaccctcaccatcagc
aacctcgacaaggtcctctacccgcgcaccgggacgaccaagggcgaggtgctcaactac
tacgcccaggtgtcgccggtgctgctgccgcacctggtcgaccgggccgtcacccggatc
cgctggccgcacggggtgcagggatcgagctttttcgagaagaacgcgccggccggcacg
ccgtcgtgggtgcgtacgcacgaggtgcccaccaccgggtcgcgctccggcaagggggag
ggcaccatccgcttcccgatctgcgacgacctcgcgaccctcacctggctggccaatctc
gccgcgctcgagctgcacgtccaccagtggacggtcgacgacgacgggcgcccgcgcgac
ccggaccgcctcgtgatcgacctcgaccccggggagcccgctggcctccacgagtgcgcc
caggtggccctgatggtccgtgacgcgctcgccgagcgcgacctgggctgcacgccggtc
acgagcggcagcaaggggctgcacctctacgccccgatgcccggcgggaaggacagcctc
gacagcgacggcacgacggcgctggccaaggaggtcgccgaggagctgcagaaggagcac
cccgacctggtgacgagcgtgatgaccaaggcgaagcggcccggcaaggtcttcctcgac
tggtcgcagaactccggctccaagacgacgatctcgccctactcgctgcgcggtcgcgag
cgaccgactgccgcgacgccgctgacgtgggacgaggtcgaggagggcgccgaggacgag
ctggccctcgagcagttctcgatggagcaggtgctggagcgcgtgaccgacctcggggac
gtcttcgaggcctga
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