Nocardioides renjunii: SHK17_16735
Help
Entry
SHK17_16735 CDS
T10238
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nrn Nocardioides renjunii
Pathway
nrn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SHK17_16735 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nrn03400
]
SHK17_16735 (mfd)
Enzymes [BR:
nrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SHK17_16735 (mfd)
DNA repair and recombination proteins [BR:
nrn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SHK17_16735 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
WQQ21528
LinkDB
All DBs
Position
complement(3490624..3494223)
Genome browser
AA seq
1199 aa
AA seq
DB search
MPSTPLLAVARRLVSAPTLGGALADAAVQPSLDLTGPGALRPFVVHGLVERGRTVLAVTA
TSREAEDLVEELADLVDPDSVAYYPSWETLPHERLSPRSDTVGRRLAVLRRLRHPGTDAA
NGPLRVVVAPIRSLLQPQVPGLADIEPVELAPGDSRPLEDVVRGLADAAYSRVDMVERRG
EFAVRGGIVDVFPPTEEHPLRVEFWGDDVEEIRAFSVADQRTLETVQRLWAPPCRELLLT
DDVRRRAAELGQAHPQLLELTDKMAAGIAVEGMESLAPVLVDSMELLVDLMPTDTTVLVL
DPERARGRAHDLVATSDEFLSASWAAAAGGGTAPIDLGAASYREIADVRLRALGLGLAWW
SVSPFGIDTGDTDDAAATGPTYPAAADAGVPSRALPSHPAEAYRGDLQQAVDDIRGWVRD
GVETVVVHAGHGPAQRFVELLGENDIAARLVEEGDTAGPNVVTVTCGHLVHGLVDDQAGV
AVLTGDDLSGQKSSTRDMRRMPTRRKKQIDPLELKAGDYVVHEQHGVGRFVEMRQREIGG
AVREYLVLEYGPSKRGGPNDMLYVPADTLDQVTRYVGGENPSLDRLGGGDWTKRKNKARR
AVREIAAELIKLYAARQATEGHAYGPDTPWQRELEDAFPFTETVDQLTTVDEVKADMRRV
VPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVTQHMSTFSERMSGFPVV
IKGLSRFQTDKEAKEVIAGLEDGSVDVVVGTHRLLNPDIKMRDLGLIIVDEEQRFGVEHK
EQMKRMRTSVDVLSMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTYVGAYEDRQVV
AAVRRELLREGQVFYIHNRVQSIEKAAARIRELVPEARVATAHGQMGEHALEQVMLDFWE
KRFDVLVCTTIVESGLDVSNANTMIIERSDTLGLSQLHQLRGRVGRSRERAYAYFLYPSE
KPLTETAHERLATLAQHSDLGGGMAIAMKDLEIRGAGNLLGGEQSGHIADVGFDLYVRLV
GEAVADFKGGGEDDQLQEVRIELPVDAHLPHDYIPSERLRLEIYKRLAEVRTDADVDEVR
AELVDRYGTPPEVVESLLVVARFRARCRQVGVKEVTVAGKYVRFAPVDLPDSRVVRLQRL
HPRSVVKAPVSTILVPRPQGTGFPVRPVTGVALLEWARGVIDDIIAAPAPAAVPQGVTP
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
gtgccgtccacgccgctcctcgccgtcgcccgccggctcgtctccgctcccaccctgggg
ggcgccctggccgacgcggcggtgcagcccagcctcgacctgaccggccccggcgccctc
aggcccttcgtggtgcacggcctcgtcgagcgtgggcgcaccgtcctcgcggtgaccgcc
acctcccgcgaggccgaggacctcgtcgaggagctcgccgacctggtcgaccccgactcg
gtggcctactaccccagctgggagacgctgccccacgagcggctcagcccgcgcagcgac
acggtgggtcgccggctcgccgtcctgcggaggctgcgccaccccggcaccgatgccgcc
aacggccccctgcgcgtcgtcgtcgcacccatccgcagcctgctccagccccaggtgccc
gggctggccgacatcgagcccgtcgagctcgcgcccggcgactcccgtccgctcgaggac
gtcgtgcgcggcctggcggacgcggcgtactcgcgggtcgacatggtcgagcgccgcggc
gagttcgcggtgcgcggcggcatcgtcgacgtcttcccgcccaccgaggagcacccgctg
cgcgtggagttctggggtgacgacgtcgaggagatccgagcgttctccgtcgccgaccag
cgcaccctcgagacggtgcagcgcctctgggcgccgccgtgccgcgagctgctgctcacc
gacgacgtacgccgccgcgccgccgagctcggccaggcccacccgcagctgctcgagctc
accgacaagatggccgccggcatcgccgtggagggcatggagtcgctcgcgccggtcctg
gtcgactcgatggagctgctggtcgacctcatgcccaccgacaccaccgtgctggtgctc
gaccccgagcgggcgcgcggccgggcccacgacctggtcgcgaccagcgacgagttcctg
agtgcgtcgtgggccgccgcggccggcggcggcaccgcccccatcgacctgggcgccgcc
tcctaccgcgagatcgccgacgtccggctccgcgcgctcgggctcgggctcgcctggtgg
tcggtgagcccgttcggcatcgacaccggtgacaccgatgacgcagccgccaccggtccc
acctatcccgcggccgccgacgccggggtgccgagccgcgccctgccctcccacccggcc
gaggcctaccgcggcgacctgcagcaggccgtcgacgacatccgcggctgggtgcgcgac
ggcgtggagaccgtcgtggtccacgccggccacggccccgcccagcgcttcgtggagctg
ctcggcgagaacgacatcgccgcccggctcgtcgaggagggcgacaccgccggccccaac
gtcgtgacggtgacctgcggccacctcgtccacggcctcgtcgacgaccaggccggtgtc
gcggtcctcaccggcgacgacctctccgggcagaagtcctccacccgcgacatgcgccgc
atgccgacgcggcgcaagaagcagatcgacccgctcgagctcaaggcgggcgactacgtc
gtccacgagcagcacggcgtgggccgcttcgtggagatgcggcagcgcgagatcggcggc
gcggtccgcgagtacctcgtgctggagtacggccccagcaagcgcggcgggcccaacgac
atgctctacgtcccggccgacaccctcgaccaggtcacccgctacgtcggcggcgagaac
ccgagcctcgaccggctcggcggtggcgactggaccaagcgcaagaacaaggcgcgccgc
gccgtgcgggagatcgcggccgagctgatcaagctctacgccgcccggcaggccaccgag
ggccacgcctacggcccggacaccccatggcagcgcgagctcgaggacgccttccccttc
accgagaccgtcgaccagctgaccaccgtcgacgaggtcaaggccgacatgcgccgggtc
gtcccgatggaccgcctcgtctgcggcgacgtcggctacggcaagaccgagatcgcggtc
cgcgcggcgttcaaggcggtgcaggacggcaagcaggtcgcggtgctggtgccgacgacg
ctgctcgtcacccagcacatgtcgaccttctccgagcggatgtcgggcttcccggtcgtc
atcaagggcctctcgcggttccagaccgacaaggaggccaaggaggtcatcgccgggctc
gaggacgggtcggtcgacgtcgtcgtgggcacccaccgcctgctcaaccccgacatcaag
atgagggacctcggcctcatcatcgtcgacgaggagcagcgcttcggtgtcgagcacaag
gagcagatgaagcggatgcgcacgtcggtcgacgtgctgtccatgagcgccacgccgatc
ccacgcaccctcgagatggcggtcaccggcatccgggagatgtcgaccatcaccacgccg
ccggaggagcggcaccccgtcctcacctacgtcggcgcctacgaggaccgccaggtcgtc
gccgccgtccgccgcgagctgctgcgcgagggccaggtcttctacatccacaaccgggtg
cagtcgatcgagaaggcggccgcgcggatccgcgagctggtgcccgaggcgcgcgtggcc
accgcccacgggcagatgggcgagcacgccctcgagcaggtcatgctcgacttctgggag
aagcgcttcgacgtcctggtctgcacgaccatcgtggagagcggcctcgacgtgtccaac
gccaacacgatgatcatcgagcgctccgacaccctcgggctctcccagctccaccagctg
cgcggtcgcgtcggccgctcccgcgagcgtgcctacgcctacttcctctacccctcggag
aagccgctcaccgagaccgctcacgagcggctcgccacgctggcgcagcactccgacctc
ggcggcggcatggcgatcgcgatgaaggacctcgagatccgcggcgccggcaacctgctc
ggcggcgagcagtccggccacatcgccgacgtcgggttcgacctctacgtccgcctcgtg
ggcgaggctgtcgccgacttcaagggagggggcgaggacgaccagctccaggaggtccgc
atcgagctgcccgtcgacgcccacctgccgcacgactacatcccgagcgagcggctgcgc
ctcgagatctacaagcgcctggcggaggtgcgcacggacgccgacgtcgacgaggtccgc
gccgagctcgtcgaccgctacggcaccccgcccgaggtcgtggagtcgttgctcgtcgtc
gcccggttccgtgcccgctgccgccaggtcggcgtgaaggaggtgacggtggccggcaag
tacgtccggttcgcgccggtcgacctccccgactcccgcgtcgtacgcctgcagcgcctg
cacccgcgcagcgtcgtcaaggcgccggtcagcacgatcctcgtgccgcgcccgcagggc
acggggttccccgtgcgaccggtcacgggcgtggccctgcttgaatgggcgcgcggtgtg
atcgacgacatcatcgccgcgcccgcacccgcagccgtaccgcaaggagtgaccccgtga
DBGET
integrated database retrieval system
