Nocardioides renjunii: SHK17_17975
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Entry
SHK17_17975 CDS
T10238
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
nrn Nocardioides renjunii
Brite
KEGG Orthology (KO) [BR:
nrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nrn03032
]
SHK17_17975
03400 DNA repair and recombination proteins [BR:
nrn03400
]
SHK17_17975
Enzymes [BR:
nrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SHK17_17975
DNA replication proteins [BR:
nrn03032
]
Prokaryotic type
DNA Topoisomerases
SHK17_17975
DNA repair and recombination proteins [BR:
nrn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SHK17_17975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
WQQ21769
LinkDB
All DBs
Position
complement(3745331..3746326)
Genome browser
AA seq
331 aa
AA seq
DB search
MPRLRRTAPHQPGWTRRRSGKGFTYLDQHGDKLGPEEVARCKALVIPPAWRDVWITPYPH
GHLQAVGTDDAGRRQYLYHPQWRASRDAAKFDRILDFGKALSKARERVLTDIGAEGMSLE
RACAVAVRLLDLGYFRIGNDVYTDTNGSFGLTTLLKEHVSRHGDRMRFAFVGKSGVEHNI
EIDDPSAIEALEVMRRRRGGGDELLAWKDGKRWRDLSSSDVNDYIRGCFGIDATAKDFRT
WHATVIAAAALADTSEPGQTKASRKRAVSSAMKEVSEFLGNTPTLARTSYVDPRVVEAYE
RGQTITVRGEYDSSDARQAALERAVLKLLTG
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgactgcggcggacggctccccaccagcccggttggacgcgtcgccgctcgggc
aagggcttcacctacctcgaccagcacggcgacaagctgggacccgaggaggtcgcgcgc
tgcaaggcgctcgtcatccccccggcctggcgcgacgtatggatcacgccctacccccac
ggccacctgcaggccgtcggcaccgacgacgccggccggcgccagtacctctaccacccg
cagtggcgcgccagccgcgacgccgccaagttcgaccggatcctcgacttcggcaaggcg
ctgtccaaggcgcgcgagcgggtgctcaccgacatcggcgccgaggggatgtcgctcgag
cgggcgtgcgccgtggcggtgcggctgctcgacctcggctacttccgcatcggcaacgac
gtctacaccgacaccaacggctccttcggcctgacgacgctgctcaaggagcacgtgtcg
cggcacggcgaccgcatgcggttcgccttcgtcggcaagtcgggcgtggagcacaacatc
gagatcgacgacccgtcggcgatcgaggcgctcgaggtgatgcgacgccggcgcggcggg
ggtgacgagctgctggcctggaaggacggcaagcgctggcgcgacctgtcgtcgagcgac
gtcaacgactacatccgcggctgcttcggcatcgatgcgacggccaaggacttccgcacc
tggcacgccaccgtgatcgcggccgccgccctcgccgacacctccgagccggggcagacc
aaggcctcgcgcaagcgcgccgtctccagcgcgatgaaggaggtctcggagttcctcggc
aacaccccgaccctggctcgcacgtcctacgtcgacccgcgggtcgtcgaggcctacgag
cgcggtcagaccatcacggtccgtggcgagtacgactcctccgacgcccggcaggcggcg
ctcgagcgggcggtgctcaagctcctcaccggctga
DBGET
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