Nocardioides renjunii: SHK17_20465
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Entry
SHK17_20465 CDS
T10238
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nrn Nocardioides renjunii
Pathway
nrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHK17_20465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nrn03019
]
SHK17_20465
03009 Ribosome biogenesis [BR:
nrn03009
]
SHK17_20465
Enzymes [BR:
nrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SHK17_20465
Messenger RNA biogenesis [BR:
nrn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SHK17_20465
Ribosome biogenesis [BR:
nrn03009
]
Prokaryotic type
rRNA helicases
SHK17_20465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
adh_short
Cas3-like_C_2
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WQQ22250
LinkDB
All DBs
Position
complement(4265855..4267585)
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AA seq
576 aa
AA seq
DB search
MSDDQPAAPEQNFSDLGLSPEVLKALADVGYETPSQIQAQTIPPLLEGRHVVGLAQTGTG
KTAAFALPILSQLDLSQKTPQALVLAPTRELALQVSEAFEKYAAHMKGVRVLPIYGGQGY
GVQLSALRRGVHVVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILA
DTPADKHVALFSATMPAQIRRISKKYLEDPVEITVKNKTSTVSSITQRYLIVSYPQKVDA
LTRILEVENFEGMIVFVRTKNETETLAEKLRARGYSAMAINGDVAQVQRERTINQLKAGK
LDILVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRTGDSIAFVTPRERH
LLRAIEKATRQPLTQMQLPTVDDVNATRLSRFDDQITQALSEPERIDFFRDVVSHYVSEH
DVAEVDVAAALAAVMHGEQPLLLEPEPEQRTRSFEERSSHAGKADRPPRESRSGQPMAAY
RIEVGKRHKVEPRQIVGALANEGGLSRGDFGYISIKPDFSVVELPAELPPGTLDRLAATR
ISGKLIEIKPDNGPFRGRTGGGHAKGGGYKGKNPRS
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgacgaccagcccgcagcgcccgagcagaacttctccgacctcggcctctcgccc
gaggtcctgaaggcgctggccgacgtcggttacgagacgccctcccagatccaggcccag
accatcccgccgctgctcgagggacgccacgtcgtcggcctcgcgcagaccggcaccggc
aagacggcggccttcgcgctgccgatcctgtcgcagctcgacctgtcgcagaagaccccg
caggcgctcgtgctggccccgacgcgcgagctcgcgctgcaggtctccgaggccttcgag
aagtacgccgcccacatgaagggcgtccgcgtgctgccgatctacggcggccagggctac
ggcgtccagctgtccgcgctgcgccgcggcgtgcacgtcgtcgtcggcacccccggtcgc
atcatggaccacctcgagaagggcacgctcgacctctcggagctgcgcttcctcgtcctc
gacgaggccgacgagatgctcaagatgggcttcgccgaggacgtcgagacgatcctcgcc
gacacccccgccgacaagcacgtggcgctgttctcggccaccatgccggcgcagatccgc
cggatctccaagaagtacctggaggaccccgtcgagatcaccgtcaagaacaagacctcg
acggtctcctcgatcacccagcgctacctcatcgtgtcctacccgcagaaggtcgacgcc
ctcacgcgcatcctcgaggtggagaacttcgaggggatgatcgtcttcgtccgcacgaag
aacgagaccgagacgctggccgagaagctccgggcccggggctactccgcgatggcgatc
aacggcgacgtggcgcaggtgcagcgcgagcgcaccatcaaccagctcaaggccggcaag
ctcgacatcctcgtggccaccgacgtcgcggcccgcggcctcgacgtcgagcggatcagc
cacgtcgtcaactacgacatcccgaccgacaccgagtcctacgtccaccgcatcggtcgc
accggccgcgccggccgcacgggcgactcgatcgccttcgtcaccccgcgcgagcgccac
ctgctgcgggccatcgagaaggccacccgccagccgctgacccagatgcagctgccgacg
gtcgacgacgtcaacgccacccgcctctcgcgcttcgacgaccagatcacccaggcgctg
tccgagcccgagcgcatcgacttcttccgcgacgtcgtctcgcactacgtcagcgagcac
gacgtggccgaggtcgacgtggccgccgccctcgcggcggtgatgcacggcgagcagccg
ctgctgctcgagccggagcccgagcagcgcacccgctcgttcgaggagcgctccagccac
gccggcaaggccgaccgccccccgcgggagtcgcgcagcggccagccgatggcggcgtac
cgcatcgaggtcggcaagcgccacaaggtcgagccgcgccagatcgtcggcgccctggcc
aacgagggcgggctgtcgcgcggcgacttcggctacatctccatcaagccggacttctcc
gtcgtcgagctccccgccgagctgccgccgggcaccctcgaccggctcgccgccacccgg
atctccggcaagctcatcgagatcaagccggacaacgggccgttccgcggtcgcaccggc
ggcgggcacgccaagggcggcggctacaagggcaagaacccccggtcctga
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