Nocardioides rotundus: K8W59_04965
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Entry
K8W59_04965 CDS
T07669
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nro
Nocardioides rotundus
Brite
KEGG Orthology (KO) [BR:
nro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nro03016
]
K8W59_04965
Enzymes [BR:
nro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
K8W59_04965
Transfer RNA biogenesis [BR:
nro03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
K8W59_04965
Prokaryotic type
tRNA splicing ligases
K8W59_04965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UAL30856
LinkDB
All DBs
Position
complement(1017111..1018277)
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AA seq
388 aa
AA seq
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MKQLTETLLSWASILEDTTREQAETTATMPFIHPHVALMPDAHLGLGATVGSVIPTLGAI
IPAAVGVDIGCGMIAVRTPYTADELPADRAPVREAIERAVPLNAGAANRTVSRDHTRERL
ERLRSLADEAGFDPATYAARWELQLGTLGSGNHFIEVTVDEESRVWLFLHSGSRGVGNKI
AQHHIGVAREQCAGEQLPHRDLAYLTEGTPEFDAYIAQMRWAQTYALLNREEMMDRVARQ
FAEWVGTAEVERTEEINCHHIYTEPEHHYGKDVWLSRKGAINAEAGRPGLIPGSMGTASY
VVVGKGDPASLNSAPHGAGRSFSRTRARKTFTVEDLRAAMTGIEYRDTDAFIDEIPAAYK
DIDQVMADAADLVEVRHVLRQVVNVKGD
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagctgaccgagacgctcctgagctgggcgtcgatcctcgaggacaccacgcgc
gagcaggcggagaccacggcgacgatgccgttcatccacccgcacgtcgcgctgatgccc
gacgcccacctggggctgggcgcgaccgtgggctcggtgatcccgaccctgggcgcgatc
atccccgccgccgtgggcgtggacatcgggtgcggcatgatcgccgtgcgcacgccgtac
accgccgacgagctgcccgccgaccgggcgccggtgcgggaggccatcgagcgcgcggtg
ccgctcaacgccggcgccgcgaaccgcacggtgagccgggaccacacccgcgagcggctc
gagcgtctgcggagcctcgccgacgaggcgggcttcgaccccgcgacctacgccgcgcgc
tgggagctgcagttgggcaccctcggctccggcaaccacttcatcgaggtgaccgtggac
gaggagtcccgggtgtggctgttcctgcactcgggctcgcggggcgtcggcaacaagatc
gcccagcaccacatcggggtggcgcgcgagcagtgcgcaggcgagcagctgccgcaccgc
gacctggcctacctcaccgagggcacgccggagttcgacgcctacatcgcccagatgcgg
tgggcgcagacctacgcgctgctcaaccgcgaggagatgatggaccgggtcgcgcggcag
ttcgccgagtgggtcggcaccgccgaggtcgagcgcaccgaggagatcaactgccatcac
atctacaccgagccggagcaccactacggcaaggacgtgtggctgtcccggaagggcgcg
atcaacgcagaggcggggcggccgggcctgatcccggggtcgatgggtacggcgtcctac
gtcgtcgtcggcaagggcgacccggcgtcgctcaactcggcgccgcacggggccgggcgc
agcttctcccggacccgggctcgcaagaccttcaccgtggaggacctgcgggccgcgatg
acgggcatcgagtaccgcgacaccgacgcgttcatcgacgagatccccgcggcctacaag
gacatcgaccaggtgatggccgacgcggccgacctggtcgaggtccgccacgtgctgcgg
caggtggtgaacgtcaagggcgactga
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