Nocardioides rotundus: K8W59_14150
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Entry
K8W59_14150 CDS
T07669
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nro
Nocardioides rotundus
Pathway
nro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K8W59_14150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nro03019
]
K8W59_14150
03009 Ribosome biogenesis [BR:
nro03009
]
K8W59_14150
Enzymes [BR:
nro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K8W59_14150
Messenger RNA biogenesis [BR:
nro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K8W59_14150
Ribosome biogenesis [BR:
nro03009
]
Prokaryotic type
rRNA processing factors
K8W59_14150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
UAL28947
LinkDB
All DBs
Position
complement(2867511..2870579)
Genome browser
AA seq
1022 aa
AA seq
DB search
MLEEKDEANASGSDATEAAMNDVEAVESAPTRAPRKRTSKKAAEPAPEPGEPAAEQEQPP
ATKAPAKKRSTAKKSAAKKADGDAAETETPATADADTADAADPEPKKAKKSGAKGGKKKA
ASPETPEASETAAGETGESGATAAPLFQAPQTTSAQAAKATTPDAEPADQQPASDSGESS
GNSGDSDSADSESADSESGSEGSEGGGRRRRRRGGRRRRKGSGSGDGSGEGQDAQDSEQA
KDSGKESGKQGSGQGKDSGKQGSGRGDQGDQGEADDDSESGGSRRRRRRRRAGENGGDGS
DDPQNTVTRVRKGRSPEDEITSLTGSTRLEAKKQRRREGREAGRRRAPIVSEAEFLARRE
SVDRVMVIREREDLTQIAVLEDKVLVEHYVARESQTSLIGNVYLGRVQNVLPSMEAAFID
IGKGRNAVLYAGEVNWQALGHKEGEPRKIESVLSSGQTVLVQVTKDPIGHKGARLTSQIS
LPGRFLVYVPDGNNSGISRKLPDTERNRLKALLKEIVPDSAGVIVRTAAEGAAEDELTRD
VERLKARWEDIERKAKGSAPQLLYGEPDLTLKVVRDLFTEDFSKLVIEGEKAWDTVQGYV
SHVAPDLADRLERYTPQDGLSVFATYRVDEQIAKGLDRKVWLPSGGSLIIDRTEAMTVVD
VNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRR
LVECLGRDRTRHQVAEVTSLGLVQMTRKRIGTGLLEAFSETCEHCGGRGLMIKDRPVDPK
GSGDDDGGGRRGRRGRGGRGRNGSGKGGDNGDNGSKPPSPKDVAAMSRHEQAEEDTSGAA
DAGSEQAADGSGSSEKPAQKPRRGRQPATEEPKGEEQKDQEPKGEQQKTEEPKGEQPEAA
ASTPPEPVSQEPARESAQEPTREPAPEPERAPQPAAPAVVTRTRRRSASRPAGPPSSQPA
SGEPASGESAGDDVLPGIGTPPDEGAVEPGTVDVEPGSEPAAEAEPPTVTHVPVKKRGAR
KR
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaagagaaggacgaggcgaacgcttccgggagcgacgccaccgaggccgcgatg
aacgacgtcgaggccgtcgagtcggccccgacccgcgcgccgcgcaagcgcacctccaag
aaggccgccgagcccgcccccgagccgggtgagcccgccgcggagcaggagcagccgccg
gccacgaaggccccggcgaagaagcggtcgaccgccaagaagtcggctgcgaagaaggcc
gacggcgacgcggccgagaccgagactcccgcgaccgcggacgccgacacggccgacgcg
gccgacccggagccgaagaaggccaagaagtccggcgccaagggcggcaagaagaaggcc
gcctcgccggagacgcccgaggcgtccgagaccgcggccggtgagacgggcgagtccggc
gcgaccgccgccccgctgttccaggcgccgcagaccaccagcgctcaggcggccaaggcc
acgacgcccgacgccgagccggcggaccagcagcccgcgagcgactccggcgagtcctcg
ggcaactccggcgactccgactccgcggactccgagtccgcggactccgagtccggctcg
gagggctcggagggcgggggccgtcgtcgccgccgtcgcggtggtcgtcgccgccgcaag
ggcagcgggtccggggacggctcgggcgagggccaggacgcgcaggactccgagcaggcc
aaggactccgggaaggagtccggcaagcagggctccggccagggcaaggactcgggcaag
cagggctccggcaggggcgaccagggcgaccagggtgaggccgacgacgactccgagtcc
ggcggctcgcgccgtcgacgccgccgccgtcgcgccggcgagaacggcggggacggctcc
gacgacccgcagaacaccgtgacccgggtccgcaagggccgcagccccgaggacgagatc
acctccctgaccgggtcgacccggctggaggcgaagaagcagcgccgtcgcgagggccgg
gaggccgggcggcgccgcgcgccgatcgtcagcgaggcggagttcctcgcccgccgtgag
tcggtggaccgggtgatggtcatccgcgagcgcgaggacctcacgcagatcgccgtactc
gaggacaaggtgctcgtcgagcactacgtcgcccgcgagtcccagacctcgctcatcggc
aacgtctacctcggccgggtgcagaacgtgctgccctcgatggaggcggcgttcatcgac
atcggcaagggccgcaacgcggtcctctacgccggcgaggtcaactggcaggcgctgggc
cacaaggagggcgagccccgcaagatcgagtcggtgctctcctcgggccagaccgtcctg
gtgcaggtcaccaaggacccgatcggccacaagggcgcgcgcctgaccagccagatcagc
ttgcccggtcggttcctggtctacgtgcccgatggcaacaactccgggatctcccgcaag
ctgcccgacaccgagcgcaaccggctcaaggcgctgctgaaggagatcgtccccgactcc
gccggcgtgatcgtgcgtacggcggccgagggggccgccgaggacgagctcacccgcgac
gtcgagcggctcaaggcgcgctgggaggacatcgagcgcaaggccaaggggtcggcgccc
cagctgctctacggcgagcccgacctgaccctgaaggtcgtgcgggacctcttcaccgag
gacttcagcaagctggtcatcgagggcgagaaggcctgggacaccgtgcagggctacgtc
tcgcacgtcgcgcccgacctcgcggaccggctggagcgctacacaccgcaggacgggctg
tcggtcttcgcgacctaccgggtcgacgagcagatcgccaagggcctggaccgcaaggtc
tggctgccctcgggcgggtcgctgatcatcgaccgcaccgaggcgatgaccgtcgtcgac
gtcaacaccggcaagttcaccggctccggcggcaacctggaggagacggtcaccaagaac
aacctggaggccgccgaggagatcgtccgccagctccggctgcgcgacatcggcggcatc
atcgtcgtcgacttcatcgacatggtgctggagtccaaccgggacctggtgctgcgccgg
ctggtggagtgcctgggccgggaccgcacccgccaccaggtcgccgaggtgacctcgctg
ggcctggtgcagatgacccgcaaacggatcgggaccggtctgctggaggccttcagcgag
acctgcgagcactgcggcggccgtggtctgatgatcaaggaccggccggtcgaccccaag
ggctccggcgacgacgacggcggcgggcgccgcggtcgtcgtggccgcggcggccgcggc
cgcaacggctccggcaagggcggcgacaacggcgacaacggctccaagccgccctcgccc
aaggacgtggcggccatgtcgcggcacgagcaggccgaggaggacacctccggtgctgcg
gacgcgggctcggagcaggccgcggacggttcgggctcctcggagaagcccgcccagaag
ccgcgccgcggccgccagccggcgaccgaggagccgaagggcgaggagcagaaggaccag
gagccgaagggcgagcagcagaagacggaggagccgaagggcgagcagcccgaggcggcg
gcgtccacaccgcccgagcccgtctcccaggagccggcccgcgagtcggcccaggagccg
acccgcgagcccgcccccgagccggagcgggccccccagccggccgccccggccgtggtc
acccgtacccgccggcgcagcgccagccgcccggccggcccgccgagcagccagcccgcg
tcgggggagcccgcgtcgggggagtccgccggggacgacgtactccccggcatcggcacc
ccgcccgacgagggggccgtggagcccggcacggtcgacgtcgagcccggcagcgagccc
gcggccgaggccgagccgcccacggtgacgcacgtgccggtgaagaagcgcggggcgcgc
aagcgctga
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