Novosphingobium rhizosphaerae: R9J51_03475
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Entry
R9J51_03475 CDS
T11371
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
nrz Novosphingobium rhizosphaerae
Pathway
nrz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nrz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R9J51_03475 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nrz03021
]
R9J51_03475 (rho)
03019 Messenger RNA biogenesis [BR:
nrz03019
]
R9J51_03475 (rho)
Transcription machinery [BR:
nrz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
R9J51_03475 (rho)
Messenger RNA biogenesis [BR:
nrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
R9J51_03475 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
Spore_III_AA
AAA_22
ATPase_2
NACHT
S1CSD-TOTE-2
AAA_25
AAA
AAA_14
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
XVN47206
LinkDB
All DBs
Position
complement(758071..759327)
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKELKKKTPAELVEMAEELGVEGASTMRRQDLMFAILKEVAEDGEEILGIGTIEVLPD
GFGFLRSPEANYLAGPDDIYVSPNQVRKWGLRTGDTVEGEIRAPKDGERYFAITRLMKVN
FDDPDAVRHRVNFDNLTPLYPNERLKLDTLDPTVKDKSARVIDLVSPQGKGQRALIVAPP
RTGKTVLLQNMAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVKGEVISSTFDEPATRHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVPRDQLGKMWVLRRILMQMGTVDAMEFLLDKMKDSKTNEDFFATMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatcttaaagaactcaaaaagaaaacccctgccgagctggtcgaaatggccgaagag
ctgggcgtggaaggcgcaagcacgatgcgccgccaggacctcatgttcgccatcctcaag
gaagtggccgaagatggggaagaaatcctcggcatcggcacgatcgaagtgctgcccgac
ggcttcggcttcctgcgtagccccgaagcgaactatctggccgggccggacgacatctat
gtctcgcccaaccaggtccgcaagtggggcctgcgcacgggcgacacggtggaaggcgaa
atccgcgcgcccaaggacggcgagcgctactttgccatcacccgcctgatgaaagtcaat
ttcgacgatcccgacgccgtgcgccaccgcgtcaacttcgacaacctcaccccgctctat
cccaacgagcgcctgaagctcgacacgctcgatcccacggtcaaggacaagtccgcccgc
gtgatcgacctggtcagcccgcagggcaagggccagcgcgcgctgatcgtggcgccgccg
cgcaccggcaagaccgtgctgctgcagaacatggccaaggcgatcaccgacaatcacccg
gaagtgttcctgctggtcctgctggtcgacgaacgccccgaagaagtgaccgacatgcag
cgttcggtgaagggcgaggtcatctcctccaccttcgacgaacccgccacgcgccacgtc
caagtggccgaaatggtcatcgaaaaggccaagcgcctggtcgaacacaagcgcgatgtg
gtcatcctgctcgactcgatcacccgtctcggccgcgcctacaacaccgtggtcccgtcc
tcgggcaaggtgctgaccggcggtgtggacgccaacgccctgcagcgccccaagcgcttc
ttcggcgccgcgcgcaacatcgaggaaggcggctcgctctcgatcatcgccaccgcgctg
atcgacaccggcagccgcatggacgaagtgatctttgaagaattcaagggcaccggcaac
tcggaaatcgtgctcgaccgcaaggtggccgacaagcgcatcttccccgcgctcgacgtg
ggcaagagcggcacgcgcaaggaagaactcctcgtgccgcgcgaccaactcggcaagatg
tgggtgctgcgccgcatcctcatgcagatgggcacggtcgacgcgatggaattcctgctc
gacaagatgaaggattccaagaccaacgaagacttctttgcgaccatgaaccagtaa
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