Novosphingobium rhizosphaerae: R9J51_04000
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Entry
R9J51_04000 CDS
T11371
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
Organism
nrz Novosphingobium rhizosphaerae
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
XVN47303
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Position
868234..872397
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AA seq
1387 aa
AA seq
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MATKAPARAGLKKRIRKIFGDIHEVVQMPNLIEVQRESYEQFLRSDPATGYVSGLEKTLR
SVFPIQDFAGTASLDIKERDGYVLEAPKYDVNECRQRGITYAAPMKVTLKLATFEVDAET
ETKSLIDIKEQDVYMGDIPLMTDNGTFIINGTERVIVSQMHRSPGVLFDHDRGKTHSSGK
YLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLNGEQILDHFYNKVT
WVRAEGGWKVPFVLDQWRGAKPTFDIVDAASGEVVFPAGQKISPRAANKAAKDGLQSLLI
PTEEIFGRYAAKDLIDESTGRIWIEAGDEVAPENLDVLDRAGVDQLDLLDIDHVSTGPWI
RNTMKADKAEDRDHALADIYRVMRPGEPPTRETAEALFDGLFFDADRYDLSAVGRVKLNM
RLGLDCPDTITTLRTEDILAVVKELVNLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVG
LLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHK
RRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTFARVNKYGFI
ETPYRKVLDGKVSSEVVYLSAMEEQKHTVAQASAEITGDGSFVEELVSARQNGEFVMAPR
ETVTLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKADAPFVGTGMEET
VARDSGAAIAALRGGIVDQVDATRIVIRVTGDVEPGKSGVDIYTLQKFERSNQSTCINQR
PLVSVGDIVEKGDILADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERIVKEDVF
TSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYVGAEVHPGDILVGKIT
PKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTIVDVRTFNRHGIEIDDRTRAI
QNEEIERLAKDREDERAILNRATFNRLKDMLLGQVATAAPKGIKKGVEIDEQILADVERH
EWWKFAVADDLRQQQLEATKGQYDTAIKAIQEKFEDRKEKLERGDELAPGVLKMVKVFVA
VKRKLQPGDKMAGRHGNKGIISRILPQEDMPFLEDGTPVDFVLNPLGVPSRMNVGQIFET
HLGWAARGLGHKIGAALDAWREANPDPQAGEPPEAVRELLLDIYGDNYVEEIKARSDSEI
VELAQNVRNGVPMGSPVFDGAVEADVTAMLRKAGLDESGQVTLYDGRTGEAFDRKVTVGC
KYVLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQE
MLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELSSLDDEGDED
GLAEAAE
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggctccagcccgcgccggcctgaagaagcgcatccgcaagatcttcggc
gacatccacgaagtggtgcagatgccgaacctgatcgaggttcagcgcgaatcgtacgag
cagttcctgcgctccgatccggccacgggctatgtctcgggcctggaaaagacgctgcgt
tcggtgttcccgatccaggatttcgccggcacggccagcctcgatatcaaggagcgcgac
ggctatgtgctggaagcgcccaagtacgacgtgaacgaatgccgccagcgcggcatcact
tatgctgcgccgatgaaggtgacgctcaagctcgcgacgttcgaagtggacgccgaaacc
gagaccaagagcctcatcgatatcaaggagcaggacgtctacatgggcgatatcccgctc
atgaccgacaacggcaccttcatcatcaacggcaccgagcgcgtgattgtgtcgcagatg
caccgttcgccgggcgtgctgttcgaccatgaccgcggcaagacgcactcttcgggcaag
tacctgtttgccgcgcgcgtcattccctatcgcggctcgtggctcgatttcgaattcgac
gccaaggacatcgtcaacgtgcgtatcgaccgcaagcgcaagctgccggtcaccgcgctg
ctctatgccctgggcctcaatggcgagcagatcctcgaccacttctacaacaaggtcacc
tgggtgcgcgccgaaggcggctggaaggtgcctttcgtgctcgaccagtggcgcggcgcc
aagcccacgttcgacatcgtcgatgccgcttcgggcgaagtggtgttcccggccggccag
aagatcagcccccgcgctgccaacaaggcggccaaggacggcttgcagtcgctgctgatc
ccgaccgaggaaatctttggtcgctatgccgccaaggacctgatcgacgaatcgaccggc
cgcatctggatcgaagccggcgatgaagtggcgccggaaaaccttgacgtgctcgaccgc
gccggggtggaccagctcgacctgctcgacatcgaccacgtcagcaccggcccgtggatc
cgcaacacgatgaaggccgacaaggccgaagatcgcgaccacgccctggccgacatctat
cgcgtgatgcgccccggcgaaccgccgacgcgcgaaaccgccgaagccctgttcgacggc
ctgttcttcgacgccgaccgctatgacctttcggccgtgggccgcgtcaagctgaacatg
cgcctgggcctggactgccccgacacgatcaccaccctgcgcaccgaggacatcctcgcc
gtggtcaaggaactggtgaacctcaaggacggcaagggcgaagtcgacgacatcgacaac
ctcggcaaccgtcgcgtgcgttcggtgggcgagttgctggaaaaccagtaccgcgtcggc
ctgctgcgcatggaacgcgcggtcaaggaacgcatgagctcggtcgacgtgtcgaccgtg
atgcccaacgacctgatcaacgccaagccggcggtggccgcggtgcgtgaattcttcggc
tcctcgcagctgtcgcagttcatggaccagaccaacccgctgtcggaagtgacgcacaag
cgccgcgtctcggccctcgggccgggcggtctgacgcgtgaacgcgccggcttcgaagtg
cgcgacgttcaccccacgcactatggccgcatctgcccgatcgaaacgcccgaagggccg
aacatcggcctgatcaactcgctctcgacctttgcccgcgtcaacaagtacggcttcatc
gaaacgccgtaccgcaaggtgctggatggcaaggtttcgtcggaagtggtctacctttcg
gccatggaagagcagaagcacacggtggcgcaggcttcggccgaaatcaccggcgacggc
tcgttcgtggaagaactggtttcggcccgccagaacggcgaattcgtgatggcgccgcgc
gaaaccgtgacgctgatggacgtcagccccaagcagctcgtttcggtggccgcctcgctc
attccgttcctggaaaacgacgacgccaaccgcgcgctgatgggctcgaacatgcagcgc
caggcggtgccgctggtcaaggccgacgcgccgttcgtgggcaccggcatggaagaaacc
gtggcgcgcgattcgggcgccgcgatcgccgcgctgcgcggtgggatcgtcgaccaggtg
gacgcgacgcgtatcgtgatccgcgtgaccggcgatgtcgaacccggcaagtcgggcgtg
gacatctacaccctgcagaagttcgagcgctccaaccagtccacctgcatcaaccagcgt
ccgctggtgagcgtgggcgatatcgtcgaaaagggcgatatcctggctgacggcccctcg
actgagttcggcgaactggccctcgggcgcaacgtgctcgtcgcgttcatgccctggaac
ggctacaactacgaagactcgatcctgatcagcgagcgcatcgtcaaggaagacgtcttc
acctcgatccacatcgaggagttcgaagtcatggcccgcgacaccaagcttgggcccgaa
gacatcacccgcgacattcccaacgtgggcgaggaagcgctgcgcaacctcgacgaagcg
ggcatcgtctacgtgggcgccgaagtgcaccccggtgacatcctcgtcggcaagatcacg
cccaagggcgaatccccgatgacgccggaagaaaagctgcttcgcgcgatctttggcgaa
aaggcgtctgacgtgcgcgatacctcgctgcgcctgccgccgggcgtttcgggcacgatc
gtggacgtgcgcacgttcaaccgccacggcatcgagatcgacgaccgtacccgcgccatc
cagaacgaggaaatcgaacgcctcgccaaggaccgcgaagacgagcgcgcgattttgaac
cgtgcgaccttcaaccgcctgaaggacatgctgctgggccaggtggccaccgccgcgccc
aagggcatcaagaagggcgttgaaatcgacgagcagatcctggccgacgtggaacgccac
gaatggtggaagttcgccgtggccgacgatctgcgccagcagcagctcgaagcgaccaag
ggccagtacgacaccgcgatcaaggcgatccaggagaagttcgaggaccgcaaggaaaag
ctggagcgcggcgacgaactggcgccgggcgtgctcaagatggtcaaggtcttcgtggcg
gtgaagcgcaagctgcagccgggcgacaagatggccggccgccatggcaacaagggcatc
atcagccgcatcctgccccaggaagacatgcccttcctggaagacggcaccccggtcgat
ttcgtgctcaacccgctgggcgtgccttcgcgcatgaacgtcgggcagatcttcgaaacc
cacctgggctgggccgcacgcggcctgggccacaagatcggggcggcgctcgacgcctgg
cgcgaagccaatcccgatccgcaggccggtgagccgcccgaagcggtgcgcgaactgctg
ctcgacatctatggcgacaactacgtcgaagagatcaaggcacgcagcgacagcgaaatc
gtcgaattggcccagaacgtgcgcaacggcgtgccgatgggatcgccggtgttcgacggc
gccgtggaagccgacgtgaccgccatgctgcgcaaggccgggttggacgaatccggccag
gtgacgctgtatgacggccgcaccggcgaagcctttgaccgcaaggtcaccgtaggctgc
aagtacgtgctcaagctgcaccacctggtggacgacaagatccacgcccgttcgatcggc
ccctacagcctcgtcacccagcagccgctgggcggcaaggcccagttcggtggccagcgc
ttcggggaaatggaggtctgggcgctccaggcctatggcgcggcctacacgctgcaggaa
atgctcacggtcaagtccgacgacgttgtcggccgtaccaaggtctatgaagcgatcgtc
aagggtgacgatacgttcgaggccggcattcccgaaagcttcaacgtgctggtcaaggaa
atgcgcagcctgggtctcaacgtcgaactctcgtcgctcgacgacgaaggcgacgaggac
ggcctggccgaggcagccgaataa
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