Novosphingobium rhizosphaerae: R9J51_11415
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Entry
R9J51_11415 CDS
T11371
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nrz Novosphingobium rhizosphaerae
Pathway
nrz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nrz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
R9J51_11415 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nrz03021
]
R9J51_11415 (rpoD)
Transcription machinery [BR:
nrz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
R9J51_11415 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF4168
Asp_Glu_race
Disulph_isomer
Motif
Other DBs
NCBI-ProteinID:
XVN44952
LinkDB
All DBs
Position
complement(2497237..2499237)
Genome browser
AA seq
666 aa
AA seq
DB search
MASNDKTDSGDAPLIDLNEASIKKLIARAKRRGVITYDELNEALPQDQMSSEQIEDIMAA
ISEMGVNIVESDEDAVDPEEREAEEAEDADTGMDDRPVVEKRKETIERTDDPVRMYLREM
GAVELLSREGEIAIAKRIEAGRDTMIMGLCESPITFHAIIQWSEALNAGEMQLREILDLD
AMLSKEPQPENLSEDGEDADGEISEATAGPSFKEEEDVEEEETEDEDDELRERRARPAEE
EEEDNTLSLAQMEATLKPAALEKFAEITSLFRTFEKLQGERLDSLGLGLAFSAAKEAEYH
KLREELTAQVESVQFHASKIEYLVDNLYAFNRRLTTLGGQMLRLAERHKVSRKDFLDHYV
GRELDEGWLQSLATRDKKWAAFAANETAAVERIRSEVADIASATGMQLAEFRRIVNMVQK
GEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF
STYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERL
SMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKM
RSFLDQ
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaacgacaagaccgatagcggcgatgcaccgctgatcgaccttaacgaggct
tcgatcaagaagctgatcgcgcgcgccaagcgccgcggggtcatcacttatgacgagctg
aacgaggctttgccgcaagaccagatgtcctccgagcagatcgaggacatcatggccgcg
atctcggaaatgggcgtcaacatcgtcgagagcgacgaggacgcggtcgatcccgaagag
cgtgaggccgaggaagccgaagacgccgacaccgggatggatgaccgcccggttgtggaa
aagcgcaaggaaaccatcgagcgtaccgacgacccggtgcgcatgtacttgcgcgaaatg
ggcgcggtggagctgctcagccgcgagggcgaaatcgccatcgccaagcgcatcgaagcc
ggccgcgacaccatgatcatgggcctgtgcgaaagcccgatcaccttccacgccatcatc
cagtggtccgaagcgctaaacgcgggcgaaatgcagctgcgcgagatcctcgatctcgac
gccatgctgtccaaggaaccgcagccggaaaacctttccgaagacggtgaagacgccgac
ggcgaaatcagcgaagcgaccgccggcccttccttcaaggaagaggaagacgtcgaggaa
gaggaaactgaggacgaggacgacgagctgcgcgaacgccgcgcgcgcccggccgaggaa
gaggaagaggacaacaccctttcccttgcccagatggaagccacgctcaagccggccgcg
cttgagaagttcgccgaaatcaccagcctgttccgcactttcgaaaagctgcagggcgag
cgcctggattccctgggccttggcctggcgttttcggccgccaaggaagccgaataccac
aagctgcgcgaggaactgaccgcgcaggtggaaagcgtgcagttccatgcctccaagatc
gaatacctggtcgacaatctctatgcgttcaaccgccggctgaccacgctgggcgggcag
atgctgcgcctggccgaacgccacaaggtgagccgcaaggatttcctcgatcactacgtc
ggccgtgaactggacgaaggctggttgcagtcgctcgccacgcgcgacaagaagtgggcg
gcctttgccgccaacgaaaccgccgccgtcgagcgcattcgttccgaagtggccgacatc
gcttcggccaccggcatgcaactggccgaattccgccgcatcgtgaacatggtgcagaag
ggcgagcgcgaagcgcgcatcgccaagaaggaaatggtcgaggcgaacctgcgcctggtg
atctcgatcgccaagaagtacaccaaccgtggcctgcaattcctggacctgatccaggaa
gggaacatcggcctgatgaaggcggtggacaagttcgagtatcgccgcggctacaagttc
agcacgtatgccacgtggtggatccgccaggcaatcacccgctcgatcgccgaccaggcg
cgcaccatccgcatcccggtgcacatgatcgaaacgatcaacaagctggtgcgcaccagc
cgccagttcctgcacgagcagggccgcgagcccacgcccgaggaaatggccgagcgtctg
tcgatgccgctcgaaaaggtgcgcaaggtgatgaagatcgccaaggagccgatctctctc
gaaacgccgatcggcgacgaggaagattcgcacctgggcgatttcatcgaggacaagaac
gcgatcattccggtggatgcggccatccaggccaatctcaaggaaaccgtcacccgcgtc
cttgccagcctgaccccgcgcgaggaacgcgtgctacgcatgcgtttcggcatcggcatg
aacaccgatcacacgctggaggaagtgggccagcagttctcggtgacgcgcgaacgtatc
cgccagatcgaggccaaggcgctgcgcaagctcaagcacccgagccgcagccgcaagatg
cgctcgttcctggaccagtaa
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