Nitratifractor salsuginis: Nitsa_0004
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Entry
Nitsa_0004 CDS
T01405
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nsa
Nitratifractor salsuginis
Pathway
nsa03410
Base excision repair
nsa03430
Mismatch repair
nsa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Nitsa_0004
03430 Mismatch repair
Nitsa_0004
03440 Homologous recombination
Nitsa_0004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsa03400
]
Nitsa_0004
DNA repair and recombination proteins [BR:
nsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Nitsa_0004
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Nitsa_0004
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Nitsa_0004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DUF218
Cecropin
Motif
Other DBs
NCBI-ProteinID:
ADV45278
UniProt:
E6WXV7
LinkDB
All DBs
Position
4311..5906
Genome browser
AA seq
531 aa
AA seq
DB search
MDFPYPRLHSLAQIEALLRERFDDTFLSLKDLPDPYAFKDMERAVERIAEAIEKGEKIVL
VGDYDVDGVSSTAIMRRFFEALGVPLEWVIPNRFRDGYGLSPTLFPRLEHADLILTVDNG
IAANEAAKLCKEAGIDLIITDHHIVPDTPPQAYAIVDQKQSDCGFPHREVCGAQIAWYLC
AALNRRLGAGIDMKALLELTALAIIADIMPLQHINRAMVHQGLRLLERSHSPFIVAWRER
NGKERLRAEDIAFGLAPLINSAGRMEDASIACDFLCAPTSQEAHKLLERLQGFNERRKGM
EENIFQEAQAQIDPEAPLAIAIGEEWHEGVLGIVAARIARRFEVPALVLTRSGASYKGSG
RSFGSCHLYELLATQRSLMEKFGGHAAAVGLSVSEEKLGHWKQRLQEEALSRCPRESFAD
PEILGEIGFDLLGWELYRLLERFEPYGEGNPRPKFITRGVSVESLRVLGSEGQHFKVLLS
DGTFRQEAIQFRCSALPETGDRIDLVYTLNENRFNGRSTLQLLIDKFRNVT
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggatttcccctacccccgcctccattcccttgcccagatcgaagcgctgctgagagag
cgtttcgacgatacgttcctttcgctaaaagatcttccggacccctatgctttcaaagat
atggagcgggcggtagagcggatcgccgaggcgatcgaaaagggtgaaaagatcgtcctc
gtaggcgattacgatgtggacggggtgagctctacggcgattatgcggcgtttcttcgag
gcgttgggagttcccctggagtgggtcatccccaaccgttttcgggacggctacgggctc
tcgcccaccctctttccccgcctggagcatgccgatctgattctcaccgtcgataacggg
atcgccgcgaatgaagcggcgaagctctgcaaagaggcggggatcgatctgatcattacc
gaccaccacatcgttcccgacaccccgccgcaagcctacgccattgtcgatcagaagcag
tccgattgcggcttccctcatcgggaagtctgcggggcgcagatcgcctggtacctctgt
gcggccctcaaccgccggctgggggcgggcatcgatatgaaagcgcttttggagttgacg
gccctggcgatcatcgccgacattatgcctctgcagcatatcaaccgggcgatggtccat
caggggttgcgcctcctggagcggagccacagcccctttatcgtcgcctggagggaacgc
aacggcaaggagcgtttgagggctgaggatatcgctttcggtctggcaccgctgatcaac
agcgcgggccggatggaggatgcctccattgcctgtgattttctctgcgccccgacatcg
caggaggctcataaacttttggagcgccttcagggcttcaacgaacggcgcaaagggatg
gaagagaatatctttcaggaggcgcaggctcagatcgatccggaggctcccctggccatc
gctataggcgaagagtggcacgagggggtgttggggatcgtcgccgcgcggattgcccgt
cgctttgaagttccggcgctggtgctcacccgttccggcgcctcctacaaagggagcgga
cggagtttcggctcctgccatctctatgaacttctggcgacccagcgatctttgatggag
aagttcggagggcacgcggccgcggtcgggctttcggtgagtgaagagaagctcgggcat
tggaagcagcgtttgcaggaagaggcgctgagccgatgtcccagggaatccttcgccgat
ccggagatcctgggggagatcggattcgatctgctcggctgggaactctaccggctcctg
gagcgtttcgaaccctatggagaggggaacccccggcccaaattcattacgcgtggggtt
tcggtcgaatcgctgagggtcctgggcagtgaagggcagcacttcaaagtcctcttgagt
gacggaacctttcgtcaggaggcgatccagttccggtgctccgctctccccgagaccggc
gatcggatcgatctggtctataccctcaacgaaaaccgtttcaacgggcgcagtactctg
cagctattgatcgacaaatttcgcaacgttacctga
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