Nitratifractor salsuginis: Nitsa_0377
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Entry
Nitsa_0377 CDS
T01405
Name
(GenBank) ribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
nsa
Nitratifractor salsuginis
Pathway
nsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nitsa_0377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsa03019
]
Nitsa_0377
03016 Transfer RNA biogenesis [BR:
nsa03016
]
Nitsa_0377
Enzymes [BR:
nsa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Nitsa_0377
Messenger RNA biogenesis [BR:
nsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Nitsa_0377
Transfer RNA biogenesis [BR:
nsa03016
]
Prokaryotic type
tRNA degradation factors
Nitsa_0377
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_2nd
OB_RNR_1st
OB_RNB
CSD2
Motif
Other DBs
NCBI-ProteinID:
ADV45647
UniProt:
E6WZY9
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All DBs
Position
complement(386727..388709)
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AA seq
660 aa
AA seq
DB search
MSPFGIQLTRGFLPQELEEEDYSKYEILEGIGALVQGEDGLWRLKSLYRVGRLWISQEGK
GYVEAEDKEEKDLLIEPGDLGDAKNGDEVVVKRIIARRGRPSAKVILVTRPAHVIVIGYT
YRDEEGNFSVRNIKTGEPTEAIMPGMDLKAFKVGTVLLIDAATSQVKEVLGHLGDARVDE
RISLLLYGREGEKFPSDCVEQALEIPAEVQPQEIEGRVDLRHLPFCTIDPVTAKDFDDAI
YLDLASHTLYVAIADVSHYVPYFSPIDKEAKVRGFTTYLPHKAFPMLPRELSENICSLKP
HVDRLAFISKIRLDPETLQPLEEEFFEGVIHSKRRFNYDEIDAVLEGKKDTFTETESEIM
EWLLPLQKITERLRRQRLKKGFDFRSDEVRLAIDPDHELKETTIETGTPSHSLIEECMLL
ANKAAAKRFEGDGDSIFRIHEAPDRAKMEELLEELATVGIYVEVSEESESPAIIRAIQKE
AQRMGLGAEVDALIIKSLRRASYSPFNVGHFGLGFDKYSHFTSPIRRYSDLILHRLIKAD
LQKDRERKEYLLRNIEPLCVRVSELERNATKAEWDFRDRKFARWAKRHLGEHFPAQIVEI
DIEDTQKGAKAVIKCEMQGIVVELPEYDALLFDRIEVELVEADIALAVIRARQIRKLEKE
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgagtcctttcggtatccaactcacccgcggctttctcccccaggaactcgaagaggag
gactacagcaaatacgagatcctcgaagggatcggcgcactcgtccaaggagaagatgga
ctctggcgcctgaagtccctctaccgcgtgggccggctctggatctcccaggagggcaaa
ggctacgtcgaagctgaggacaaagaagagaaagaccttctaatcgaacccggagacctg
ggcgacgccaagaacggcgacgaagtggtcgtcaagcggatcatcgcccggcgcggccgc
cccagtgccaaagtgatcctcgtcacccgccccgcccatgtgatcgtcatcggatacact
tatcgggacgaagaaggtaacttctcggtgcgcaatatcaaaaccggggaacccaccgaa
gcgatcatgccggggatggacctcaaagccttcaaagtcggcaccgttttgctgatcgat
gccgccacttcccaggtcaaagaggtactgggccatctgggcgacgcccgcgtagatgag
cgcatcagcctgctgctctacgggcgtgagggggaaaagttcccgtccgactgcgtggag
caggccctcgagatccccgccgaagtgcagccacaggagatcgaggggcgcgtggatctg
cgccatttgcccttctgcaccatcgatcccgtcaccgccaaggatttcgacgatgccatc
tatctggaccttgccagccataccctctatgtggccattgccgacgtgagccactacgtc
ccctacttcagccccatcgacaaggaggccaaggtgaggggcttcaccacttacctaccc
cacaaagccttcccgatgctccccagggaactcagtgagaatatctgctcgcttaaaccc
cacgtggaccggctcgccttcatcagcaagatccggctcgatccagaaaccctccagcct
ctggaagaggagtttttcgagggggtgatccactcgaaacgccgcttcaactacgatgag
atcgatgcggtactcgaagggaaaaaggacacatttaccgagacagaatcggagattatg
gagtggctgctgcccctgcagaagatcaccgaacgcctgagacgccaacggctcaaaaaa
ggcttcgacttccgcagcgacgaggtgcgcctggccatcgatcccgatcacgagctcaag
gagaccaccatcgagaccggcaccccgtcccacagccttatcgaagagtgtatgcttctg
gccaacaaagccgccgccaaacgctttgagggagacggagattcgatcttccggatccac
gaagcccccgaccgggccaagatggaggagctgctcgaagagttggccacggtggggatc
tatgtggaggtttcggaagagagcgaatctcccgccattatccgcgccatccagaaagaa
gctcagcgtatggggctcggcgccgaggtggacgccctgatcatcaaatccctgcgccgg
gcctcctactcccccttcaatgtagggcacttcggattgggctttgacaaatacagccac
ttcacttcgccgatccggcgttacagcgacctgatcctccatcgcctcatcaaagctgac
ctgcaaaaggaccgggagcgcaaagagtacctcctgcgcaacatcgagcccctctgtgtc
cgggtcagcgaactggaacgcaacgccaccaaagccgaatgggattttagagaccgcaaa
ttcgcccgctgggccaagcggcacctgggagagcacttccccgcccagatcgtggagatc
gatatcgaagatacgcaaaagggagccaaggcggtcatcaagtgcgaaatgcaaggcatc
gtcgtagaactccccgaatacgacgccctgcttttcgaccgcatcgaagtggaactcgtc
gaagccgacatcgccctcgccgtcatccgcgccaggcagatccggaaattggagaaagag
tga
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