Nitratifractor salsuginis: Nitsa_1258
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Entry
Nitsa_1258 CDS
T01405
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nsa
Nitratifractor salsuginis
Pathway
nsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nitsa_1258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsa03019
]
Nitsa_1258
03009 Ribosome biogenesis [BR:
nsa03009
]
Nitsa_1258
Enzymes [BR:
nsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Nitsa_1258
Messenger RNA biogenesis [BR:
nsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Nitsa_1258
Ribosome biogenesis [BR:
nsa03009
]
Prokaryotic type
rRNA helicases
Nitsa_1258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
TTRAP
Motif
Other DBs
NCBI-ProteinID:
ADV46511
UniProt:
E6WYS5
LinkDB
All DBs
Position
complement(1257347..1258735)
Genome browser
AA seq
462 aa
AA seq
DB search
MTFKDFDLHPEVAKGVRIAGFKEPSPIQKEAIPIILEGRDLVGQAHTGTGKTAAFGLPIL
DRIARGEIERALVITPTRELATQVSDELYHLGRFAGIRTLAVYGGVGYGRQIALIHRGVQ
IVVATPGRLKDLYQKGKIDVFNPEVVVLDEADEMLDMGFLDDVREIFEYIPQNRQTLLFS
ATMPDPIKELADTLLYEPEFISVVGEETTKNVDIEQYYYVINENQRDEAIVRLLETENYD
KALIFCRMKREVDRLAEELKALGFNAAGLHGDIDQMERDAIVKSFRRGETRILIATDVAA
RGLDIKNVTHVFNYHIPFDPQSYVHRIGRTGRAGKRGRAITLASTEEFRELQRIRKEVGA
DMKLATLQVAGSGSIGDEQIEMLSQKLQETALHPMVDQVLAKMSDMDQSTFIKKAISYIL
ETEEFDESDRIGYDEEELEALLGEFEATQRQSKSGKKRKRRR
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagattttgacttgcacccggaggtggccaagggagtccgcatcgccggc
ttcaaagagcccagcccgatccagaaagaggcgatccccatcatcctggaggggcgtgat
ctggtgggtcaggcccacaccgggaccggaaagaccgcagccttcggtctgccgatcctc
gaccggatcgcccggggagagatcgagcgggctttggtaatcacccccacgcgggagttg
gcgacccaggtcagcgatgagctttaccatttggggcgcttcgccgggatccggactctg
gcggtctatggcggcgtaggctacggtcggcagatcgctctgatccaccggggcgtgcag
atcgtcgtggcaaccccgggacggctcaaagacctctaccagaagggcaaaatcgatgtc
tttaaccccgaagtggtggttttggacgaggcggacgagatgctcgatatgggctttctc
gacgatgtgcgggagatcttcgaatacatcccccaaaaccgccagacgctgcttttctcg
gcgacgatgcccgatcccatcaaagagctcgccgatacgctgctctatgagccggagttc
atctccgtcgtcggggaagagaccaccaaaaacgtcgatatcgagcagtattactatgtc
atcaatgaaaatcagcgcgacgaagcgatcgtccggctgctggagacggagaattacgac
aaagccctgatcttctgccggatgaagcgggaggtggaccgcctggccgaagaactcaaa
gccctgggcttcaacgcggcggggctgcacggcgatatcgaccagatggagcgggatgcc
atcgtcaaatccttccggcggggagagacccggatcctcatcgccaccgacgtcgcggcc
cggggactggatatcaaaaacgtcacccacgtcttcaactaccatatccccttcgatccc
cagagctatgtccaccgcatcggccggacgggccgggcgggcaagcggggccgggccatc
accctggcttcgacggaagagttccgggagcttcagcgcatccgcaaagaggtaggagcc
gacatgaagctggcgaccctccaggtagccggaagcggcagcatcggcgacgagcagatc
gagatgctcagccaaaagcttcaggagaccgcgctgcacccgatggtggaccaggtcctg
gccaaaatgtccgatatggaccagagtacctttatcaaaaaagcgatcagctatatcctg
gagaccgaagagttcgacgagagcgatcggatcggctatgacgaagaggagctcgaagcg
ctgctcggggagttcgaagcaacccagcgccagagcaaaagcggcaaaaagcgaaaaaga
agacgctaa
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