Nitratifractor salsuginis: Nitsa_1737
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Entry
Nitsa_1737 CDS
T01405
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nsa
Nitratifractor salsuginis
Pathway
nsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nitsa_1737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsa03019
]
Nitsa_1737
03009 Ribosome biogenesis [BR:
nsa03009
]
Nitsa_1737
Enzymes [BR:
nsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Nitsa_1737
Messenger RNA biogenesis [BR:
nsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Nitsa_1737
Ribosome biogenesis [BR:
nsa03009
]
Prokaryotic type
rRNA helicases
Nitsa_1737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
AAA_19
AAA_30
Cas3-like_C_2
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
ADV46983
UniProt:
E6X1C1
LinkDB
All DBs
Position
1738713..1740146
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AA seq
477 aa
AA seq
DB search
MTFEDFNFKPQLAQAIKEAGFREPSPVQKEAIPLILEGRDLIAQAHTGTGKTAAFGLPVL
QQLSCDGSVEALVIVPTRELATQVSDEIFRFGKALSIRTATVYGGSSYTRQIQHVQSASV
VVATPGRLIDLLQSGKISLSPRFVILDEADEMLDMGFLDDIKEIFTHLPESRQTLLFSAT
MSKEIRTLAQRILKDPATVSITGGNVTNEKIRQLFYVVDEPERDDALVRLLDYKNPDKSI
IFCRMKKEVDRLRDFLAAQGYDAKGLHGDMDQRQREATIRAFKNGQAEILIATDVAARGL
DVNDVSHVFNYHLPFDPESYVHRIGRTGRAGREGTAISIVSPHEFRSLQRIQKSVGSSIE
SRIIPRIEEVRAQRSDALIQRIEKQEVDTASYELIEELKEEYDLTTLACKLLSMLRDEEE
VRGADRIGKDLKEIERLFTRMKEERHYKKGRGGRNYNNNRRRNDRSGGYRKKESGRR
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcgaagacttcaacttcaaaccccaactggcccaggccatcaaagaggcggga
ttccgcgaacccagccctgtacaaaaagaggcgatccccctgatcctggaggggcgcgac
ctcatcgcacaggcccataccggtaccggcaaaaccgccgccttcggacttcccgtgctt
cagcagctcagttgcgatggcagcgtcgaagccctggtgatcgtccccacccgggagctg
gccacccaggtcagcgatgagatcttccgcttcggcaaagctctgagcatccgcaccgcc
accgtttatggaggcagctcctacacccggcaaatccagcatgtccagagtgcctcggta
gtcgtcgccactcccggccgcctcatcgacttgctccaaagcggtaagatttccctctct
ccccgattcgtcatccttgacgaagcggatgagatgcttgacatgggctttctcgacgat
atcaaagagatcttcactcatctccccgagagtcggcaaaccctcctcttctccgcgacc
atgtccaaagagatccgcactctggcccaacgcatcctcaaggatcccgccaccgtctcc
atcacgggaggcaatgtcaccaatgaaaagatccgccaactcttctacgtcgtcgacgag
ccggagcgggatgatgccctggtgaggctgctcgattacaaaaatcccgacaagagcatc
atcttttgccggatgaaaaaagaggtggaccgcctcagagacttcctggcagcccaggga
tacgacgccaaaggtctgcacggagatatggatcagcgtcaacgcgaagcgacgatccgc
gctttcaaaaacggccaggcagagatcctcatcgccaccgatgtcgccgccaggggcttg
gatgtcaacgatgtcagccatgtcttcaactaccacctcccatttgatcccgagagctat
gtccataggatcggccggaccggacgtgccggacgggaaggaacggcaatctccatcgtc
tctccccacgagttccgctccctccagcgaatccagaagagtgtcggctcctccatcgaa
agccgcatcattccgaggatcgaagaggtacgcgcacagcgcagcgatgccctgattcag
cgcatcgaaaagcaggaggtcgataccgcctcttacgaactgatcgaagaactcaaagag
gagtatgacctcacgactctcgcctgcaaacttctgagtatgcttcgggacgaggaggaa
gtccggggagctgaccgcattggcaaggatctcaaggagatcgagcgtctattcacccgt
atgaaagaggagcgtcattacaagaagggacggggcggccgaaactacaataacaatcgc
cgccgcaacgaccgttctggaggatatcgcaaaaaagagtccggtcgccgctga
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