Natronomonas salina: HWV07_09770
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Entry
HWV07_09770 CDS
T07280
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
nsal
Natronomonas salina
Pathway
nsal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWV07_09770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsal03019
]
HWV07_09770
03016 Transfer RNA biogenesis [BR:
nsal03016
]
HWV07_09770
Enzymes [BR:
nsal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HWV07_09770
Messenger RNA biogenesis [BR:
nsal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HWV07_09770
Transfer RNA biogenesis [BR:
nsal03016
]
Prokaryotic type
tRNA degradation factors
HWV07_09770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QLD89299
LinkDB
All DBs
Position
complement(1855360..1856664)
Genome browser
AA seq
434 aa
AA seq
DB search
MSDQDEQAYAGTAEGQGPVVIDEELARHLANKREELFEEFDIRDEFPRAVLEEAEERAAD
PEGDIETELEDRRDLRDLTTWTTDPADAQDFDDAISIERTDVGYRLWVHIADVTHYVNPE
TAMWDEAQKRGNTVYLPGYTIHMLPPILAETVCSLVPEEDRLAHTVEMHINEETLSHESI
DIYKSVIHSDARLTYNECEEALDDEDHPLHEANNLVYELAEELHEQRKEDGSLVLNPKRD
RAHTIIEECMLKANKAVTHELQWGRGLEAMFRVHPQPTPDEWDEALREIQDLDGVSIPGD
SWDDPRRAVNATLEEAPGRQLNKIQWAVMKVMPRAKYMSDPFGGHHALNFEIYGHFTSPI
RRLSDLVNHWIIYTNDVPEGIADLCDHASKTQKDAETCERQYKKFLEEVGLDAHAINNRG
LEVVEDPEDADHTV
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaccaggacgaacaggcgtacgcggggacggcggagggccagggcccggtcgtc
atcgacgaggagctcgcccgccacctcgccaacaagcgcgaggagctcttcgaggagttc
gacatccgcgacgagttcccgcgggcggtcctcgaggaggccgaggagcgggcggccgac
cccgagggcgacatcgagacggaactcgaagaccggagggacctccgggacctgacgacg
tggacgaccgacccggcggacgcccaggacttcgacgacgccatctccatcgagcggacg
gacgtcggctacagactttgggtccacatcgccgacgtcacccactacgtcaaccccgag
acggcgatgtgggatgaggcccagaagcgcggcaacaccgtctacctgccgggctacacc
atccatatgctgccgccgatcctggcggagactgtctgctcgctggtccccgaggaggac
cggctggcccacaccgtcgagatgcacatcaacgaggagacgctctctcacgagtctatc
gacatctacaagtccgtcatccactccgacgcccgcctgacgtacaacgagtgcgaggag
gccctcgacgacgaggaccacccgctacacgaggcgaacaacctcgtctacgaactcgcc
gaggagctccacgagcagcgcaaggaggacggctcgctcgtcctcaacccgaagcgcgac
cgcgcccacaccatcatcgaggagtgcatgctgaaggcgaacaaggccgtcacccacgaa
ctccagtggggccgcggcctcgaggcgatgttccgcgtccacccccagcccacccccgac
gagtgggacgaggctctccgggagatccaggacctcgacggcgtctccatccccggcgac
tcctgggacgacccccggagggccgtcaacgcgacgctggaggaggcgcccggccgccag
ctcaacaagatccagtgggccgtgatgaaggtcatgccgcgggcgaagtacatgtccgac
cccttcggcggccaccacgcgctgaacttcgagatctacggccacttcacctcgcccatc
cgccggctctccgacctcgtcaaccactggatcatctacacgaacgacgtccccgagggc
atcgccgacctctgcgaccacgccagcaagacccagaaggacgccgagacctgcgagcgc
cagtacaagaagttcctcgaggaggtcggcctcgacgcccacgcgatcaacaaccgcggc
ctcgaggtcgtcgaggaccccgaggacgccgaccacacggtgtga
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