Neisseria sicca: J7445_07300
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Entry
J7445_07300 CDS
T07263
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nsc
Neisseria sicca
Pathway
nsc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nsc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
J7445_07300 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsc03021
]
J7445_07300 (rpoD)
Transcription machinery [BR:
nsc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J7445_07300 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
CortBP2
DUF5660
SPO22
GTP_EFTU
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QTM22359
LinkDB
All DBs
Position
complement(1541466..1543415)
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AA seq
649 aa
AA seq
DB search
MSKDQNHEDYQEQDDNRPLTLEEQRARLRQLIIMGKERGYITYSEINDALPDDMSDADQI
DNIVSMISGLGIQVTEQAPDAEDILLSDNAAAVTDDDAVAEAEAALSSADSEFGRTTDPV
RMYMREMGQVDLLTREDEIIIAKKIENALKNMVQAISACPGSIAEILELIEQIRKDEIRV
DEVVEAIIDPNEVLLNELGLGHLESASNDDNSGSSDEDEEDEDEDDDDSGSDAEAMSAAH
LAELKQKVLDHFAFIESEYGKMIKKLEKHDSRHPDYLAHRDAIANKLLEVRFATRQIESL
SGNLRSRVENIRKLEREIRDICLDRVHMERDYFIQNFLPEITNLKWVEEEVAKGRVWSDA
LDRFRHAILEKQTELANMEKETRISIEELKDINKNMVSSEKETAAAKQEMIQANLRLVIS
IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART
IRIPVHMIETINKMNRISRQYLQETGEEPDSAKLAELMEMPEDKIRKIMKIAKEPISMET
PIGDDDDSHLGDFIEDANNVAPADAAMYTSLHEVTKEILESLTPREAKVLRMRFGIDMNT
DHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDRLRSFLDSEDSKL
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagaccaaaatcacgaagactatcaagaacaggacgacaaccgtccgctgacc
cttgaagagcagcgcgcccgcctgcgccagctcatcattatgggtaaggaacgcggctac
atcacttattccgaaatcaacgacgccttgcccgacgatatgtccgatgcggatcaaatc
gacaacatcgttagcatgatttccggcttgggtatccaagtgaccgagcaggcgcctgat
gcggaagacattttgttgagcgacaacgccgccgccgtaaccgacgacgatgccgttgcc
gaagccgaagccgccttgtccagcgcggactccgagttcggcagaaccaccgatcccgtg
cgtatgtatatgcgcgaaatggggcaggttgacctgctgacccgcgaagacgaaatcatc
atcgccaaaaaaatcgaaaacgccctgaagaacatggtgcaggcgatttccgcctgtccg
ggttctatcgctgaaatcctcgagctgatcgagcaaatccgcaaggatgaaatccgcgtg
gacgaagtggtcgaagccatcatcgacccgaacgaagtgttgctcaacgaattgggcttg
ggacacttggaaagcgcgtcaaacgacgacaattccggcagcagcgacgaagatgaagag
gatgaagacgaagatgacgacgattccggcagcgatgccgaagccatgtccgccgcccat
cttgccgaattgaagcaaaaagtgctggatcatttcgccttcatcgaaagcgaatacggc
aagatgattaaaaagctggaaaaacacgacagccgccaccccgattatttggcacaccgc
gacgccatcgccaacaagctcttggaagtccgcttcgccacccgccaaatcgaaagcctc
agcggcaaccttcgcagccgtgtcgaaaacatccgcaagcttgaacgcgaaatccgcgac
atctgccttgaccgcgtccatatggaacgcgactacttcatccaaaacttcctgcccgaa
atcaccaacctgaaatgggtagaagaagaagtcgccaaaggcagggtctggagcgacgca
ctcgaccgcttccgccacgccatcctcgaaaaacaaaccgagttggcgaacatggaaaaa
gaaacccgcatttccatcgaagagctgaaagacatcaataaaaacatggtgtcgagtgaa
aaagaaaccgcagccgccaagcaggaaatgattcaggcaaacttgcgcctggtgatttcc
atcgccaaaaaatacaccaaccgaggtttgcagttccttgatttgattcaagaaggcaac
atcggcttgatgaaggcggtcgacaagttcgaataccgccgcggctacaaattctccacc
tacgcgacatggtggatccgccaagcgattacccgctcgattgccgaccaggcgcgcacc
atccgtattccggtgcacatgattgaaaccatcaacaagatgaaccgcatctcccgccag
tatctgcaagaaaccggcgaagagcccgattccgccaaactcgccgagttgatggaaatg
ccggaagacaaaatccgcaaaatcatgaaaatcgccaaagagccgatttcgatggaaacc
ccgatcggcgacgacgacgattcgcacttgggcgacttcatcgaggatgccaacaacgtc
gcccctgcagacgccgcgatgtacaccagcctgcacgaagtcaccaaagaaatcctcgaa
agcctgacaccgcgcgaagccaaagtcctgcgtatgcgtttcggtatcgacatgaatacc
gaccacacgctcgaagaagtcggcaaacagtttgacgtaacccgcgaacgtatccgtcaa
atcgaagccaaagccctgcgcaaactgcgtcatccgacccgcagcgaccgcctcagaagc
ttcctcgacagcgaagacagcaaattgtaa
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