Neisseria sicca: J7445_09285
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Entry
J7445_09285 CDS
T07263
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nsc
Neisseria sicca
Pathway
nsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J7445_09285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsc03019
]
J7445_09285
03009 Ribosome biogenesis [BR:
nsc03009
]
J7445_09285
Enzymes [BR:
nsc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
J7445_09285
Messenger RNA biogenesis [BR:
nsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J7445_09285
Ribosome biogenesis [BR:
nsc03009
]
Prokaryotic type
rRNA processing factors
J7445_09285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Motif
Other DBs
NCBI-ProteinID:
QTM24322
LinkDB
All DBs
Position
complement(1964644..1967661)
Genome browser
AA seq
1005 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDY
GTDRHGFLPFKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISL
AGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAELDIPNGMSIIARTAGIGRSAEELEW
DLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAE
FMSYVMPSNVGRLKLYQDHTPLFSRFQIEHQIESAFARSVSLPSGGAIVIDHTEALVSID
VNSARATRGSDIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVL
RDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHV
LRIIQEEAMKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHY
EINRIRIDDVEEDGEPSYKRVAEPEEDESAKPFGSERAKAARPEPAVKGVRHTQPAPTVS
EQKSGSWWDSFKAWLKRIFGGNTAAETAPVAEVAEKRTSNGNNRNGNSGNRRANNRRQNP
RRNNRHDGSKVEVREVADFKDKAADNQTAENETRNAKDNRRSRNRQNERSAAAEAENLEV
QAFAATTSSENESRSGEQEQGNKRRRNNNRNERNREQAEIRAEETLSETVDNVAEEGVQT
AEADAPKGNERRQRERNNQRDRRERNNQRDRRQNGKKRNIPSAAKIEQYLNIHDTSDKVR
FAAAHVMGEPVEEAPFAVTIPAPEDSAEPLVVVVSEPVTVAEEAFVFSIEGEDVDSDILI
EDSTDDECSIIDSAIGSVEETSTSVFAIETEDGYQPMTAVPAEGQVEAVAEMEEELVVWK
AEREAAAAIEALAAAAAQAAESEPQTAPEASQVEATEPEETAPAVAAMPDLGGLVFVETN
PEAVAAFAEQVQPEPESGLRRSDVPKVEAEPVAAAEMVLVETSKD
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgttcaatgcaacgcaagcggaagagctgcgcgttgccattgtcgat
gggcaaaaccttttggatttggacatcgaaacgctgggtaaagagcagcgcaaaggtaat
atttacaagggtatcatcacccgtatcgagccgtcgctggaagcgtgtttcgtggattac
ggaaccgaccgccacggctttttgccgtttaaggaagtatcgcgttcgtatttccgcgat
tacgaaggcggcagggcgcgcattcaagacgtgctcaaagaaggcatggaagtcatcgtt
caagtcgaaaaagacgaacgcggcaacaaaggcgcggcgctgaccaccttcatcagcctt
gccggacgctatttggtattgatgccgaacaacccgcgcggcggcggcgtatcccgccgt
atcgaaggcgaagagcgtcaagaactcaaagccgctatggcagaactcgacattccgaac
ggcatgagcatcatcgcacgcaccgccggtatcggccgcagcgcggaagagttggaatgg
gatttgaactacctcaaacaactctggcaggcgatcgaagaagcaggaaaagcgcatcac
gacccttacctcctcttcatggaaagctcgctgctcatccgcgccatccgcgactatttc
cgtcccgacatcggcgaaattctggtggataatcaagaggtttacgatcaagttgccgag
tttatgagctacgtcatgccgagcaacgtaggtcgtctgaaactctatcaagaccatacg
ccgctgttttcccgcttccaaatcgaacaccaaatcgaaagcgcgttcgcccgcagcgtc
agcctgccttccggcggcgcgattgtgatcgaccataccgaagccttggtttccatcgac
gtcaactccgcccgcgccacccgcggctcggacatcgaagataccgcgttcaaaaccaat
atggaagctgccgaagaagtcgcccgccaaatgcgtttgcgcgacttgggtggtttggtc
gtcatcgacttcatcgacatggaaaaccccaaacaccagcgcgatgttgaaaacgtcctg
cgcgacgcgctcaaaaaagaccgcgcccgcgtgcaaatgggcaagctgtcccgcttcggt
ctcttggaattgagccgccaacgcctgaaacccgctttgggcgaaagcagccatgtcgct
tgtccgcgctgcgccggtaccggcgtgatccgtggcatcgaatcgaccgccctgcacgtt
ttgcgcatcattcaagaagaagcgatgaaagacaataccggcgaagtacacgcccaagtg
cccgtcgatgtcgctaccttcctgttgaacgaaaaacgcgccgagctgtttgcgatggaa
gagcgtttggacgtcaacgtcgtcctgattccgaatatccacttggaaaatccgcactac
gaaatcaaccgcatccgcatcgacgacgtagaagaagacggcgaaccgagctacaaacgc
gttgccgagccggaagaagacgaatccgccaaacctttcggcagcgaaagagccaaagcc
gcccgtcccgaacccgccgtcaaaggcgtgcgccatacccagcctgccccgaccgtatcc
gagcagaagagcggttcatggtgggatagcttcaaagcatggctcaaacgcattttcggc
ggcaacaccgcagccgaaaccgcgcctgttgccgaggtggcagaaaaacgcacttcaaac
ggcaacaaccgcaacggcaattccggcaaccgccgcgcaaacaaccgccgccaaaacccg
cgccgcaacaataggcacgacggcagtaaggtagaagtgcgcgaagtggcggacttcaaa
gacaaagcagcggacaatcagacagcggaaaacgaaacccgcaacgccaaagacaaccgc
cgcagccgcaaccgtcaaaacgagcgcagcgccgcagcggaagctgaaaacctcgaagtt
caagcatttgccgcgacaacgtcgtctgaaaacgaatcccgttcaggagagcaggagcaa
ggcaacaaacgccgccgcaacaacaaccgcaacgaacgcaaccgcgaacaagcggaaatc
cgtgcggaagaaaccctgtccgaaacagtggacaacgtggcggaagagggcgtgcaaacc
gccgaggccgatgcaccgaaaggcaacgaacgccgccaacgcgagcgcaacaaccaacgc
gaccgccgcgaacgcaataatcagcgcgaccgccgtcaaaacggtaaaaaacgcaatatt
ccgtctgccgccaaaattgagcagtacctgaatattcacgatacctccgacaaagtccgc
ttcgccgccgcgcacgtcatgggcgagcctgtcgaagaagcaccgtttgccgtaaccatc
cccgctcccgaggatagtgctgagcctttggttgtcgtggtttccgaacccgttaccgtt
gctgaagaagcattcgttttctccatcgaaggcgaagatgtggatagcgacatcttgatc
gaagacagcaccgacgacgaatgcagcatcatcgactctgccatcggcagcgtcgaagaa
acttcgacttccgtattcgccatcgaaaccgaagacggctaccaaccgatgaccgccgtc
ccggctgaaggccaggtcgaagccgttgccgaaatggaggaagagctggtcgtttggaaa
gccgaacgcgaagctgccgccgccatcgaagcccttgccgccgcagccgcccaagcagca
gaatcggagccgcaaactgcgccggaagcaagccaagtggaagcgaccgaaccggaagaa
actgcccctgccgttgccgcgatgcccgacttaggcggtttggtgtttgtcgaaaccaat
cccgaagccgtcgccgcttttgccgaacaggttcagcccgaacccgaatccggcttgcgc
cgctcggacgtgccgaaagtcgaagccgaacccgtcgccgctgccgaaatggtcttggtg
gaaacgagcaaagactaa
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