Nonlabens tegetincola: BST91_05080
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Entry
BST91_05080 CDS
T04875
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nsd
Nonlabens tegetincola
Pathway
nsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BST91_05080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsd03019
]
BST91_05080
03400 DNA repair and recombination proteins [BR:
nsd03400
]
BST91_05080
Enzymes [BR:
nsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BST91_05080
Messenger RNA biogenesis [BR:
nsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BST91_05080
DNA repair and recombination proteins [BR:
nsd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BST91_05080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HEM4
RimK
PH_24
Motif
Other DBs
NCBI-ProteinID:
ARN71066
LinkDB
All DBs
Position
complement(1082135..1084003)
Genome browser
AA seq
622 aa
AA seq
DB search
MIDYAREILKNTFGYDCFKGNQEEVISNILKGNDTIALLPTGGGKSICYQVPGLTMNGIT
IVISPLVALIKDQVQSLRSRQIKVIEITSGISRQELDERLDNCIYGNYKFLYLSPERLQQ
DLVQQRLQKMPINLIAVDEAHCISEWGHDFRPAYRGIKILRELGIAAPMVALTATATTQV
QQDIAINLELKDPVVIKSSFKRHNIKYQFVQTENKLSVLIEYLKELTGSCIIYMRSRKNT
VILANQLKARGITATYYHGGLTPKQREQHTQSWMNNSSQVMVATNAFGMGIDKPDVRQVY
HLQFPDSIESYYQETGRAGRDGKPSNAIFIFNRNDVNHAHHQFVASQPDKHYLKKIYKHL
HNYLNIAFGEGYQTTHYLSFSQFCKTYDLLGLPAHTALNTLDRFGIIKLSPVFKRKCLVR
FRESAEKTRQFAQTNDSYYAIIQAILRTYGGSSNQNISVQIPLIAHRSNTTEAQVIQTLS
KMHEQQLADVTLINTDNSITFLEPRDDDRAINRISRELEIQNSHKAEKLQALVKIVFNTE
ICINKMLLSYFGEKNTENCGSCSNCVIINESNLLPFFNHPTTLSQVSISSGITMENLISS
VKSLMENNKLKKVQNNLFQINE
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgattgattacgctcgcgagatattaaaaaacacttttggctatgattgctttaaaggt
aatcaggaagaagttatatcgaatatcttaaaaggtaatgacaccatagcactcttacct
actggtggtggtaaatcaatttgttaccaggttcctggattgacaatgaatggtatcacc
attgtaatatctccacttgttgctttaattaaagatcaagtacaatctttaagatctaga
caaattaaagtaatcgaaattacaagtggtataagccgtcaagaactggatgaacggctg
gataattgtatatatggtaattataaatttttatatctcagtccagagcgtttacaacaa
gaccttgttcaacaaagacttcaaaaaatgcccataaacctaatagcagttgatgaggca
cattgcatcagtgaatggggacatgattttagaccagcttatagaggtattaaaatttta
cgtgaattgggaatagcagcacctatggtggcacttacagcaactgctactactcaggtt
cagcaggatattgccattaacctggaattaaaggatcctgtagttataaaaagtagtttt
aaacgccataacattaagtatcaatttgtacaaactgagaacaagcttagtgtattaata
gaatatttaaaggagcttactggcagctgtataatctacatgcgcagcagaaaaaatact
gttatacttgctaatcaacttaaagcacgaggtattactgcaacttactatcacggtgga
cttacacccaaacaacgagaacagcacacacaatcatggatgaataacagttctcaagtt
atggttgccacaaacgcgtttggaatgggtatagataaaccagatgtaagacaagtgtat
cacctacaatttcccgatagtattgaaagttattatcaagaaacaggacgtgctggacgt
gacggtaaaccctcaaatgccattttcatatttaatcgtaatgatgtcaatcatgctcat
catcaatttgtggcttctcaacccgataaacattacttaaaaaagatttacaaacattta
cataactatttaaatattgcttttggagaaggttatcaaaccactcattacttatcgttt
tctcaattttgtaaaacctatgacttattaggattacctgcccatacagcacttaatact
ttagatagatttggaattataaagttgtctcctgtgtttaaaagaaagtgtttagtacgc
tttcgcgaaagcgcagaaaaaacaagacagtttgcccaaactaacgattcctattatgca
atcatccaggctattttacgcacctatggtggaagcagtaatcaaaatataagtgttcaa
ataccgctcattgctcacagaagtaatactactgaagctcaagtaatacaaactctatca
aaaatgcacgagcaacagctagctgatgttactttgataaacaccgataattctatcact
tttttagaacctagggatgatgatcgagcgattaatagaatttcaagagaactagagata
cagaattcccacaaagcagaaaagctacaggctcttgttaaaatagtatttaatacagag
atttgtataaacaaaatgttactctcctatttcggagaaaagaatactgaaaattgtgga
tcttgtagtaactgcgttattattaatgagagtaacttgttgcctttttttaatcaccca
actaccctatcacaagtttccatttcaagtggtattacaatggaaaatttgatttcatca
gtaaaatccttgatggagaacaataaacttaaaaaagtacagaacaatttatttcaaata
aatgagtaa
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