Nonlabens tegetincola: BST91_09000
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Entry
BST91_09000 CDS
T04875
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
nsd
Nonlabens tegetincola
Pathway
nsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BST91_09000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsd03021
]
BST91_09000
03019 Messenger RNA biogenesis [BR:
nsd03019
]
BST91_09000
Transcription machinery [BR:
nsd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BST91_09000
Messenger RNA biogenesis [BR:
nsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BST91_09000
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Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
OB_RNB
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
ARN71774
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All DBs
Position
1900369..1902060
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AA seq
563 aa
AA seq
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MFQIADLKSKKLPELQEIAKDLNVPKYRSLRKLDLVYKILDVQAENPKALENLDLDNKSE
DSPKKESKPDSKKESRTAPTKNNEQKKERRPRKNNNPKSAEKDKESNTSSNKSQPSKKEN
NTEETKTNDSNKNNKKSNDNRNDNRNEHRNDNDTRNKNNNRNKNNNRNNNSGNNVPKGNK
DNRNRYRDPDFEFDGIIESEGVLDMMPDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLK
TGDTVLGMVRPPKEGEKYFPLIKISQINGLDPKVVRDRVSFEHLTPLFPDEKFNIAERQS
SISTRVMDLFAPIGKGQRGMIVAQPKTGKTMLLKDIANAIAANHPEVYQLILLIDERPEE
VTDMQRNVSGEVIASTFDKEAHDHVRVANIVLEKAKRMVECGHDVVILLDSITRLARAYN
TVQPASGKVLSGGVDANALHKPKRFFGAARNIEGGGSLSIIATALTETGSKMDEVIFEEF
KGTGNMELQLDRNISNRRIFPAIDLTSSSTRRDDLLLDESVSQRMWIMRKYLADMNPVEA
MEFISQRIKQTRNNEEFLISMND
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaatagctgatttaaaatcaaagaaattacctgaattacaggaaattgccaag
gatttaaacgtacctaagtatagatccctgcgcaagttggatttagtttacaaaattcta
gatgttcaagcagaaaaccctaaagctctagaaaacctagacctagacaacaaaagtgaa
gattcacctaaaaaggagtctaaaccagattcaaaaaaggaatcaaggactgcgcctact
aaaaataacgaacaaaagaaagaacgtagaccaagaaaaaacaacaatccaaagtcagca
gaaaaggataaggaatctaacacttcttctaataaaagtcagccttctaaaaaagagaat
aacacagaagaaacaaaaaccaacgattctaataagaataacaaaaagtctaatgacaat
cgtaacgataatcgtaatgaacatcgtaacgataatgacactagaaataagaacaacaat
cgcaataagaacaataaccgaaacaacaatagcggtaacaatgttcctaaaggaaataaa
gacaaccgtaatcgctatcgtgacccagattttgaatttgatggaatcatcgagagtgaa
ggtgttcttgacatgatgcctgatggttatggatttttaagaagcagtgattacaactac
ttatctagcccagatgatatttatgtttctcaatcacagataagattatttggattaaaa
acaggtgacacagtactaggtatggtacgaccacccaaagaaggtgaaaaatactttcct
ttaattaaaatttctcaaatcaatggattagatccaaaggttgttagagatagagtatct
tttgaacacctcactccattatttccagatgagaaattcaatatagccgagagacaatcc
agtatttcaactagagtaatggatctatttgcccctataggaaaagggcaacgtggtatg
attgtggcgcaacctaaaacgggaaaaacaatgctacttaaagatatagcaaacgctata
gcagccaatcatcctgaagtatatcaacttatattacttatagacgaacgtcctgaagaa
gtaacagacatgcaacgcaatgtaagcggtgaagtaattgcttcaacttttgataaagag
gcgcatgatcatgtaagggtagctaacattgttctagaaaaagcaaaaagaatggttgaa
tgcggtcatgatgttgttatcctattagattcaattaccagactagcacgagcttacaac
actgttcaacctgccagcggtaaagtactttctggtggtgtggacgctaatgctttacac
aaacctaaaagattctttggcgctgctcgtaatatagaaggtggtggatcattatctatc
atagcaacggcattgacagaaactggttcaaaaatggacgaggtaatctttgaagaattt
aaaggaactggtaacatggaactacaattagatagaaatatttccaatcgtagaatattc
cctgccattgatttaacctcatcgtctacacgtagagacgacttacttcttgatgaaagc
gtatcacaacgtatgtggattatgagaaaatacctagctgatatgaatccggttgaggct
atggagtttatatcacaacgaattaaacagacaagaaacaatgaagagtttctaataagt
atgaatgattaa
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