Neisseria subflava: FAH66_04640
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Entry
FAH66_04640 CDS
T06236
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
nsf
Neisseria subflava
Pathway
nsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAH66_04640 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsf03019
]
FAH66_04640 (rnr)
03016 Transfer RNA biogenesis [BR:
nsf03016
]
FAH66_04640 (rnr)
Enzymes [BR:
nsf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FAH66_04640 (rnr)
Messenger RNA biogenesis [BR:
nsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FAH66_04640 (rnr)
Transfer RNA biogenesis [BR:
nsf03016
]
Prokaryotic type
tRNA degradation factors
FAH66_04640 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QCL70840
LinkDB
All DBs
Position
complement(957521..960001)
Genome browser
AA seq
826 aa
AA seq
DB search
MNKNTKSLNLREKDPYLEREKQRYAHPLPSREWVIELLEQKGVPTKIEALAHELSITEDE
YEFFERRLKAMARDGQVLINRRGAVCAAEKLALVKCRVEAHKDGFGFAVPLTPTGEGDFV
LYERQMRGVMHGDIVTVRPAGIDRRGRREGTVLDVVERAQSKVVGRFYMDRGVAILEAED
KRLSQSIVLEPESVAHFKPQSGQVIVAEIETYPEAHRPAVAKLIEVLGDYADSGMEIEIA
VRKHHLPHQFSEACVKAAKKIPDHVRKTDLKGRVDLRDLPLVTIDGETARDFDDAVFAEK
VGRNYRLVVAIADVSHYVRPDDGIDVDAQERSTSVYFPRRVIPMLPEKLSNGICSLNPDV
ERLCMVCDMVITYAGNIKEYRFYPAVMRSHARLTYNQVWDWISDGQDHPFKQRIDTLYQL
FKILQKKRFERGAVEFESVETQMIFDDNGKIDKIVPVVRNDAHKLIEECMLAANVCAAEF
LLKNKHTALFRNHLGPTPEKLATLREQLGLLGLSLGGGDNPTPKDYAALAEQFKNRPDAE
LLQVMMLRSMQQAVYEPHCDGHFGLAYSAYAHFTSPIRRYPDLTVHRAIKAVLNGQTYQP
NKTWQALGVHTSFCERRADDASRDVENWLKTYYMRDKVGEVFSGKISGMTSFGIFVTLDD
IHIDGLVHISDLGEDYFNFRPEIMAIEGERSGVRFNMGDTVTVKVARADLDTSKIDLTLV
SGGSVGKKRGSRKAKPVSKPTAADKPVEKRKRKLSAKEIDEALAAPVKAKKSKVKSKPAS
KPAKPSKPKAASKKKVQAKTASVKAGGKNNAQGKSVKIKVKKAAKK
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaaatactaaatctttaaatttacgagaaaaagacccgtacttggagcgggag
aaacaacgttacgctcatccgctgcccagccgtgagtgggttattgaattattggaacaa
aaaggcgtgccgacaaaaatcgaagctttggcacatgaattgtcgattacagaagatgaa
tatgaattctttgagcgccgtctgaaagcgatggcgcgcgatggtcaggtgttaatcaat
cgacgtggcgcggtgtgtgcggcagaaaaattggcattagttaaatgccgtgttgaagcg
cataaggacggatttggttttgccgtgccgctaacgccgacaggcgagggcgatttcgtt
ttgtatgagcgtcagatgcgcggcgtgatgcacggggatattgttaccgttcgtcctgcc
ggtatcgaccgcagaggccgtcgtgaaggtacggttttggatgtggtggagcgtgcgcag
tctaaagtggtcggtcgtttttatatggatcgcggcgtggctattttggaggccgaagac
aagcgtttgagccaaagtatcgtgttagagcctgaaagcgtggcgcactttaaaccacaa
tccggccaagtgattgtggctgaaatcgagacgtatcctgaagcgcatcgtcctgctgtg
gctaagctgattgaagttttgggcgattatgccgacagcggtatggaaattgaaattgct
gtacgcaagcaccatttgcctcatcaattcagcgaagcatgtgtcaaagctgcgaagaaa
attcctgatcatgtgcgtaaaaccgacttgaaagggcgcgtggacttacgcgatttgcct
ctggtaaccattgacggcgaaactgcacgggactttgacgatgcggtttttgctgaaaaa
gtcggccgcaattaccgtttggtggtggcgattgccgatgtcagccattatgtccgtcct
gatgacggaattgatgtagatgctcaggaacgcagtaccagcgtgtatttcccacgccgt
gtgattccaatgctgccggagaagttgtccaacggtatctgctcgctcaatcctgatgtt
gaacgcctgtgtatggtgtgcgatatggtgattacttatgccggcaatatcaaagaatac
cgtttctatccggcagtaatgcgttcgcatgcgcgactgacttacaatcaagtttgggat
tggatttcagacggccaagatcatccgtttaagcagcgaatcgatactctgtatcagtta
tttaaaatcttgcagaaaaaacgttttgagcgtggcgcggttgagtttgagagcgttgag
actcagatgatttttgatgacaacggtaagatcgacaagattgttcccgtcgtccgcaat
gatgcgcacaagctgattgaagaatgtatgttggcggcgaatgtttgcgcggcagaattt
ttgctgaagaacaaacatacggctttgttccgcaatcacttgggcccgactcccgaaaaa
ctggccactttacgcgagcaacttggtttgctggggctgagtttgggtggcggcgataat
ccgacgccgaaagactatgctgcgcttgccgagcaatttaaaaaccgtccggatgcggag
ttgttgcaagtgatgatgttgcgttctatgcagcaggcggtttatgagccgcattgcgat
ggtcactttggtctggcttatagcgcatatgcacactttacttctcctatccgtcgttat
cctgatttgacggtacatcgtgccattaaggctgtgttgaacggacaaacttaccagccc
aataaaacctggcaggctttgggcgtgcatacctctttctgcgaacgccgagccgatgat
gccagccgcgatgtggaaaattggctgaaaacttattatatgcgcgacaaagtcggcgaa
gtcttcagtggtaagatttcaggcatgaccagtttcggtatttttgtaacgttggacgat
attcatatcgacggtttggtacatatcagtgatttgggagaagattatttcaacttccgt
cctgaaattatggcgattgagggcgaacgcagcggtgtccgtttcaacatgggcgatacg
gtcactgtgaaagtcgcgcgtgccgatttagataccagcaagattgatttgaccttagtc
agcggcggttcagtcggtaagaaacgcggcagtagaaaagcaaaacctgtgagcaagccg
acagctgctgacaaacctgtcgaaaagcgtaagcgtaaactttcggctaaagaaatcgat
gaagcgttggctgctcccgtgaaggcaaagaagagcaaggtgaaaagtaaacctgcctcc
aagcccgctaagccaagcaaacctaaagctgcaagcaagaaaaaagtgcaggcgaaaaca
gcttccgtcaaagccggaggtaaaaataatgctcaaggcaaaagcgtgaagattaaagtg
aagaaagctgctaagaaataa
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