Neisseria subflava: FAH66_08005
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Entry
FAH66_08005 CDS
T06236
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nsf
Neisseria subflava
Pathway
nsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAH66_08005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsf03019
]
FAH66_08005
03009 Ribosome biogenesis [BR:
nsf03009
]
FAH66_08005
Enzymes [BR:
nsf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FAH66_08005
Messenger RNA biogenesis [BR:
nsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FAH66_08005
Ribosome biogenesis [BR:
nsf03009
]
Prokaryotic type
rRNA processing factors
FAH66_08005
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
ssDNA_TraI_N
Zn_ribbon_InsA
Motif
Other DBs
NCBI-ProteinID:
QCL71422
LinkDB
All DBs
Position
complement(1651148..1654042)
Genome browser
AA seq
964 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDY
GTDRHGFLPFKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISL
AGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAELDIPNGMSIIARTAGIGRSAEELEW
DLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAE
FMSYVMPSNVGRLKLYQDHTPLFSRFQIEHQIESAFARSVSLPSGGAIVIDHTEALVSID
VNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVL
RDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHV
LRIIQEEAMKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHY
EINRIRIDDVEEDGEPSYKRVAEPEEDESAKPFGSERAKAARPEPAVKGVRHTQPAPTIS
EQKSGSWWDTFKAWLKRIFGGNTAAETVPVAEVAEKRTSNGNNRNGNSGNRRANNRRQNP
RRNNRHDGSKVEVREVNAEAVDSKFEENKSNESRNDERKDNRRNRNRNNRRDDRNNERNR
VEEVVEDVNVQEVAALVEMPSENQAEQNGNKRRRNNGRNERNRHQSAENRVEDVNVQADG
EQAQVEADDNARSEEGVKNNGRQGRDRNNRQRNNRNDRRSNSKKRNIPSSAKIEQYLNIT
DTADKVLFAVAHVLGLNETVEAANATLSSESDQAEPLVIVVSEPEVTSAEPFVFAIESED
EPAVAQTEGADAEQALLASAVSNVKEAISAVLSPNETATVAPVEAPAETVATPAEAVAQA
APVAIVVPESLGDLIFVETDPQAVAAFAAQPQPEPVAKTRRSDVPKVEVEDVAVEMILVE
TRKD
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttattcaacgcaacgcaggccgaagagctgcgcgttgccattgtcgat
ggccaaaaccttttggacttggacatcgaaacgctgggcaaagaacagcgtaaaggcaat
atctacaaaggtatcattacccgcatcgagccgtcgctggaagcgtgtttcgtcgattac
ggaaccgaccgccacggctttttgccgtttaaggaagtatcgcgttcgtatttccgcgat
tacgaaggcggcagggcgcgaattcaagacgtgctcaaagaaggcatggaagttatcgtc
caagttgaaaaagacgaacgtggcaacaaaggcgcggcgctgaccactttcatcagcctg
gctggccgctatttggtattgatgccgaacaacccgcgcggcggcggcgtatcccgccgt
atcgaaggcgaggagcgtcaagagttgaaagccgccatggccgaactcgacattccgaac
ggcatgagcattattgctcgcacagccggcatcggccgcagcgcggaagagttggaatgg
gacttgaactacctcaagcaactctggcaagccattgaagaagcaggaaaagcacaccat
gacccttacctgctcttcatggaaagctcgctgctcatccgcgctatccgcgactatttc
cgtcccgacatcggcgaaattctggtggacaatcaagaggtttatgaccaagtcgccgag
tttatgagctacgtcatgccgagcaacgtaggtcgtctgaaactctatcaagaccacacg
ccgctgttctcacgcttccaaatcgaacaccaaatcgaaagcgcgtttgcccgcagcgtc
agcctgccttccggcggcgcgattgtgattgaccacaccgaagccctggtttccatcgat
gtcaactccgcccgcgcgacacgcggcgcggacatcgaagacaccgcgttcaaaaccaat
atggaagccgccgaagaagtcgcccgccaaatgcgtttgcgcgacttgggcggcttggtc
gtcatcgacttcatcgacatggaaaaccccaagcaccagcgcgatgttgaaaacgtcctg
cgcgacgcgctcaaaaaagaccgcgcccgcgtgcaaatgggcaaactttcccgcttcggc
ctcttggaattaagccgccaacgcctgaaacccgctttgggcgaaagcagccacgtcgcc
tgcccgcgctgcgccggtaccggcgtcatccgcggcatcgaatcaaccgccctgcacgtt
ttgcgcatcattcaagaagaagcgatgaaagacaataccggcgaagtgcatgcgcaagtg
cccgtcgatgttgctaccttcctgctgaacgaaaaacgcgccgagctgtttgcgatggaa
gagcgtttggacgtcaacgtcgtcctgattccgaatatccacttggaaaatccgcactac
gaaatcaaccgcatccgcatcgacgacgtagaagaagacggcgaaccgagctacaaacgc
gtcgccgagccggaagaagacgaatccgccaaacctttcggcagcgaaagagccaaagcc
gcccgtcccgaacccgccgtcaaaggcgtgcgccatacccaacccgccccgaccatatcc
gagcagaaaagcggttcatggtgggataccttcaaagcatggctcaaacgcattttcggc
ggcaataccgcagccgaaaccgtgcctgttgccgaagtggcagaaaaacgcacttcaaac
ggcaacaaccgcaacggcaattccggcaaccgccgcgcaaacaaccgccgccaaaacccg
cgccgcaacaataggcacgacggcagcaaggtagaagtgcgcgaagtgaatgccgaagct
gttgacagcaagtttgaagaaaacaaatcaaacgaaagccgcaacgacgagcgtaaagac
aatcgtcgcaaccgcaaccgtaacaaccgccgcgatgatcgcaacaacgagcgcaaccgt
gttgaggaagtggttgaagacgtaaacgttcaagaagtagctgcactggttgagatgccg
tctgaaaaccaagcggaacaaaacggcaataaacgccgccgcaacaacggccgtaacgag
cgcaaccgtcatcaatctgcggaaaaccgtgttgaggacgtgaacgttcaagccgatggc
gaacaggcgcaagttgaagcggacgacaacgcccgcagcgaagagggtgtgaaaaacaac
ggccgtcaaggacgcgaccgcaacaaccgtcagcgcaacaaccgtaacgaccgccgttcc
aacagcaaaaaacgcaatattccgtcttcggcaaaaatcgagcaatacctgaacattacc
gataccgctgacaaagtcctctttgccgtagcgcatgttttaggtttgaacgaaacggtt
gaagctgcaaatgcaacattgtcttctgaaagcgaccaagccgagccgctggtgattgtg
gtatccgagcctgaagttaccagcgcagagccattcgtatttgcgattgaaagcgaagac
gagcctgccgtagcgcaaactgaaggcgctgatgccgaacaagccctgcttgcttctgcc
gtcagcaacgttaaagaagccatttctgcagtattgtctccgaatgaaacggctactgtt
gcaccggttgaagcaccagccgaaactgttgccacaccagctgaagccgtagctcaagca
gcgcctgtcgcaatcgttgtgcctgagagcttgggcgatttgatcttcgttgaaaccgat
ccgcaagccgttgccgcttttgctgcgcagccacaacctgaaccggttgctaaaacacgc
cgttcggatgtgcctaaagtagaagtggaagacgtagcagtcgaaatgattttggtggaa
acacgcaaagattaa
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