Neisseria shayeganii: H3L94_08250
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Entry
H3L94_08250 CDS
T07084
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nsg
Neisseria shayeganii
Brite
KEGG Orthology (KO) [BR:
nsg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nsg03016
]
H3L94_08250
Enzymes [BR:
nsg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H3L94_08250
Transfer RNA biogenesis [BR:
nsg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H3L94_08250
Prokaryotic type
tRNA splicing ligases
H3L94_08250
SSDB
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Paralog
GFIT
Motif
Pfam:
RtcB
CsiE_C
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QMT39852
UniProt:
A0A7D7SG73
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All DBs
Position
complement(1681165..1682382)
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AA seq
405 aa
AA seq
DB search
MNYQEIQTENGLPIKMWTKGVPVEAAAEQQLRNLAQMPIVFKHIAAMPDVHYGIGATVGS
VVPTYRAIIPAAVGVDIGCGMIACKTTLTAADLPDNLSAVRSAIERAVPHGLTPRKMGRD
KGSWDTPPNEADVAWAALKSGFDKICAKYPVLKNTNNYRHMGTLGTGNHFIELCLDEHQA
VWIMLHSGSRGVGNAIGSLFIELAKKDAERNNVHLPDQNLAYFEEGSQYFQDYCEAVEWA
QNFARANREVMMSRVIAAVRSVITKPFETHLEAVNCHHNYVQRETHFGQQVFVTRKGAVS
AKAGQLGIIPGSMGAKSYIVRGKGNPESFESCSHGAGRKMSRTAAKKTFSVDDHIAATEG
VECRKDAGVIDEIPMAYKDIDAVMAAQKDLVDVVYTLKQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgaattaccaagaaatacaaaccgaaaacggcttgccgatcaaaatgtggaccaaaggc
gtgccggtggaggcggcggccgagcagcagttgcgcaatttggcgcaaatgccgattgtg
ttcaaacacatcgcggcaatgcccgatgtgcattacggcatcggggccaccgtgggctcg
gtggtgccgacctaccgcgccatcattcccgccgcggtgggggtggacatcggctgcggc
atgattgcctgcaaaaccacgctgactgccgccgatctgcccgataacctgtctgccgtc
cgcagcgccatcgagcgcgccgtgccgcacggcctgacaccgagaaaaatggggcgcgac
aaaggctcatgggatacgccgcccaacgaagcggatgtggcttgggcggcgctgaaaagc
ggtttcgacaaaatctgcgccaaatatccggtgttgaaaaacaccaataactaccgtcat
atgggcactttgggcaccggcaaccattttatcgagctgtgtttggacgagcatcaggcg
gtgtggatcatgctgcattccggttcgcgcggggtgggcaatgccatcggcagcctgttt
atcgaattggcgaagaaagatgccgagcgcaataatgtgcacctgcccgatcaaaatctg
gcttatttcgaagaaggcagccagtattttcaggattactgcgaagcggtggagtgggcg
cagaattttgcccgcgccaaccgcgaagtgatgatgagccgtgtgattgcggcggtgcgc
agcgtgattacgaagccgtttgaaacgcatttggaggccgtcaattgccaccacaattat
gtgcagcgcgaaacccatttcgggcagcaagtgtttgtgacccgcaaaggcgcggtgtcg
gccaaggcggggcagttgggcattattcccggcagcatgggtgcgaaaagctatatcgtg
cgcggcaaaggcaatccggagagcttcgagagctgcagccacggggcgggccgcaaaatg
agccgcaccgcggccaaaaaaacctttagcgtggacgaccacatcgccgccaccgagggt
gtagaatgccgaaaagacgccggcgtgattgacgaaatcccgatggcgtataaagacatt
gatgcggtcatggccgcccagaaagacttggtggatgtggtatataccctcaagcaggtg
gtgtgcgtgaaaggctga
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